Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5346 122 6e-23 seq2115 122 6e-23 seq1114 111 1e-19 seq2310 104 2e-17 seq3133 87.8 1e-12 seq1358 84.2 2e-11 >seq5346 Length=541963 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||| ||||| || || |||||||| || || |||||| | Sbjct 231463 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 231404 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || |||||| |||||||| ||||| |||| | | |||||||| || Sbjct 231403 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 231344 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| |||||| | || || ||||| | |||||| Sbjct 231343 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 231284 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| | || ||||||||||| ||||| Sbjct 231283 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||| ||||| || || |||||||| || || |||||| | Sbjct 360781 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 360840 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || |||||| |||||||| ||||| |||| | | |||||||| || Sbjct 360841 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 360900 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| |||||| | || || ||||| | |||||| Sbjct 360901 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 360960 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| | || ||||||||||| ||||| Sbjct 360961 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1114 Length=8361563 Score = 111 bits (122), Expect = 1e-19 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG-- 15206 || || || || ||||| || || || || || |||||||| ||| | ||| || Sbjct 2710509 CTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGG--ACAATGTACGTC 2710452 Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 | ||||| || |||||||| ||| | ||||| | ||| || || |||||| || |||| Sbjct 2710451 CATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTT 2710392 Query 15267 TGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTA 15325 |||| |||||| ||| |||||| |||| || || || ||| || ||||| || Sbjct 2710391 TGTCTTGAATTTTCGCT-TTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTT 2710333 Query 15326 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||| || || |||||||| || || ||||| Sbjct 2710332 ATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 >seq2310 Length=6428792 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| |||||||| |||||||| || || | | | || ||| Sbjct 5746168 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCT 5746109 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||| ||| | ||||| | || ||||| || || ||||| ||||| Sbjct 5746108 AGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 5746049 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | ||| || ||||||||||||||||| Sbjct 5746048 ATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTG 5745989 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 5745988 CCAGTCAAGGTCTTGACAAAGATCTGCATA 5745959 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| |||||||| |||||||| || || | | | || ||| Sbjct 5746852 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCT 5746793 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||| ||| | ||||| | || ||||| || || ||||| || || Sbjct 5746792 AGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGG 5746733 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | ||| || ||||||||||||||||| Sbjct 5746732 ATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTG 5746673 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 5746672 CCAGTCAAGGTCTTGACAAAGATCTGCATA 5746643 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || || || || ||||| || || || |||||||||||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||| |||||||| ||| | || | |||||| ||||| || Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| || ||| | || ||||| || ||| || Sbjct 5746522 ATACCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACC 5746463 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || || |||| || || ||||| || |||||| Sbjct 5746462 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 5746415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | || || || || || ||||| || || || |||||||||||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||| |||||||| ||| | || | |||||| ||||| || Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| || ||| | || ||||| || ||| || Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACC 5745779 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || ||||| | || || ||||| || ||||| Sbjct 5745778 TCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 >seq3133 Length=7630298 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 91635 AATATTTCCTAAATCGCCGACGTGTCGTTCAATTGCATTTGGCGCGCCGTGATCGTGTCC 91694 ||| || || | ||||| ||||| ||| | || || || |||||||| || || Sbjct 7349255 AATGTTGCCGAGGTCGCCAACGTGGCGTATGGTGGCGTTGGGAGCGCCGTGCTCCTGCTT 7349314 Query 91695 GGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCGAACTCGTG 91754 | |||| || || || | |||||||||||||| ||||| || |||| || ||||| || Sbjct 7349315 GTTGGGGTTAAAGTGGGCCCCAGCAGATGTGCAGCCGTTTGTGTTGTCACCAAACTCATG 7349374 Query 91755 CACATGAAAACCGTGTAAACCCT 91777 ||| || ||||||||| ||||| Sbjct 7349375 CACGTGGAAACCGTGTTTACCCT 7349397 >seq1358 Length=322254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||| ||||| || || |||||||| || || ||||| | Sbjct 194 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAGAT 135 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || |||||| |||||||| ||||| |||| | | |||||||| || Sbjct 134 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 75 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| |||||| | || || ||||| | |||||| Sbjct 74 ATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 15 Query 15317 TCTAAGGTAATGGT 15330 || || || || || Sbjct 14 TCCAAAGTGATTGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154604863252