Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3133 221 1e-52 seq1114 98.7 8e-16 seq3105 86.0 5e-12 seq2310 86.0 5e-12 seq5346 82.4 6e-11 seq2115 82.4 6e-11 >seq3133 Length=7630298 Score = 221 bits (244), Expect = 1e-52 Identities = 655/996 (66%), Gaps = 33/996 (3%) Strand=Plus/Minus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 ||| ||| | |||| | ||||| || || ||||||| |||||| || | || || || Sbjct 1022591 TTCATTTGCTATTTCTCTGTAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCC 1022532 Query 100369 GGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACC 100425 | || |||||||||| || || || ||| || | || || ||||| || Sbjct 1022531 TGTCGCGTTGCCTGTGAAGGGATTATTATCTTCGTAATTGTGG---ACACCGGTCCAGCC 1022475 Query 100426 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAG 100485 ||| |||||||| || || ||||| | ||| || |||| || || || | || Sbjct 1022474 GCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACACCTTGA---GCAAG 1022418 Query 100486 CAA---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTA 100542 ||| |||||| | || || |||| || || ||||||||| || ||||| Sbjct 1022417 CAAATATTTCACACCAAAGTCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTA 1022358 Query 100543 GAGAGTGGTTTGGTAGCCCAAATCGGT---GTTTGACCAGGCGCCTTTAAAATCGTAGCT 100599 || | || || | || | ||| ||| |||||||||||||| || ||||| || Sbjct 1022357 AAGCGGAGTCTGATGACCGAG---GGTATCGTTAGACCAGGCGCCTTTGAAGTCGTAACT 1022301 Query 100600 CATAAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTT 100659 |||||| || || | || | ||| || || | ||| | || || ||| || Sbjct 1022300 CATAAGGAAGATGTGGTCCATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAATCTT 1022241 Query 100660 GTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGTAG 100719 || | || | ||| || || |||| |||||| | || || || | || Sbjct 1022240 ATCCCATCCAGCACTAATAGCAGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCGGAAAG 1022181 Query 100720 CTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTC 100779 | || || ||| | ||||||||||||| ||| || |||| | || | || Sbjct 1022180 GTCGTTCAACATTTCACGCAATTCCTTCATTAA----TTCAACGTAAA--CATCTCCGTC 1022127 Query 100780 CCCGT---TGCCAAGAGTCGGG-TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGT 100835 | | ||||||| ||| || || || || || ||||| || || ||||| || || | Sbjct 1022126 CTTGGGACTGCCAAG-GTCTGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATAT 1022068 Query 100836 CCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGC 100895 | || ||||| || |||||||| ||| | || || || || || ||||| || || Sbjct 1022067 CTACACCGTCGAAGAACTTCCATGTCTGAAGGAAATCTTTCACAGAATCCACGAAG-CGA 1022009 Query 100896 GCCGTTTT-TCCGCATC-GTGCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGAT 100953 | | || || || ||| | ||| |||| || || | | |||||||| ||||| Sbjct 1022008 TCTCTCTTCTCTTTGTCTGTGAA-GAAGAAGAAGGGATCTGCAAGAGTCCAGCCACCGAT 1021950 Query 100954 GGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATT 101013 ||| || || ||||| |||| || |||| | || | ||| |||||||| || || Sbjct 1021949 GGAAGGTAGGATTTTAAGGTCAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTT 1021890 Query 101014 GCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCA 101073 ||| ||||| ||||| ||||| | || | |||||||| || || || | || ||||| Sbjct 1021889 GCCTTTGTATGGCTCATTCCAGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCA 1021830 Query 101074 GGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTC 101133 ||||||||||| | |||||||||||| || || |||| || || || || |||| Sbjct 1021829 CGGATCGTGAATTGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTG 1021770 Query 101134 AAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTAT 101193 |||||||| || || | |||||||| ||| ||||| |||||||| || || Sbjct 1021769 GAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAAT 1021710 Query 101194 GAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCG 101253 || |||||||| ||||| | ||||| || | || || || || || || || | Sbjct 1021709 AAAACCGTACAAAAGATGAGTCAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCT 1021650 Query 101254 GCCGTACACGCCCCACTCTACAAAATACGCAGCGAC 101289 ||| || ||||| || || || ||||| |||| Sbjct 1021649 TGGGTAGACACCCCATTCAACGAAGTACGCTCCGAC 1021614 Score = 143 bits (158), Expect = 2e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 || |||||||| || |||||||| || || || | ||||| |||||||| ||||||| Sbjct 2611908 ACTTTTTGTACGTAGTCGCGGCCTTTCACCAGCTGAACGTAAGCGCAGCGGTCGAACCAG 2611849 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 ||||||| || | |||||| |||| || | |||||||| | | |||||||||||| Sbjct 2611848 CGCGCGTGCTGCTCCCACGGGACGTCGTCGTTCTCCCAGTCCTTGAGGCCGCCGTCGCAG 2611789 Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052 || || ||||| |||||| | |||||||||| |||||||| || || || || | Sbjct 2611788 TAGAAGCATTTCGTTTTGTCCCCGTGGCCGGTGTAGAAGAAGCCGGCCTCCGCCAGCTCC 2611729 Query 25053 TCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGCTTC 25111 ||||| ||| || | ||| ||||| ||| | || ||||| | ||||| || || Sbjct 2611728 TCGGGTTTCTGCCGCATGCAGCGCGGCCAGTCTTTGAAGGTGCGGAGGCGCGCCGCCTC 2611670 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 25236 AACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCCCAG 25295 || ||||||||||| ||||| || || || || |||||||||||| || ||||| Sbjct 2611530 AAGGGGCATTGCGGGGCCCAGCGCTGGTGGTCCTTCGCGGGGTCGTCGCCCTCCACCCAG 2611471 Query 25296 CGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAGTAG 25355 ||||| || || ||||| || || |||||||| || ||||||||||| || | ||||||| Sbjct 2611470 CGCATGATTTCGACTTTACAGAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTAGTAG 2611411 Query 25356 AACCCATTGGCGGCCATTTG-TCGCGGCGACATAAATTCTACCGTCCAATT 25405 || || ||| || | || ||| ||||||| || || || | ||| || Sbjct 2611410 AAGCCGTTGCGTGCTAGCTGCTCG-GGCGACAGGAAGTCCACGGGCCACTT 2611361 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 24675 CGGCATATGGGGCAATTGGTCAATGATGACGCGCACTTGCCGCACGCTACCACATGCCCG 24734 ||||| |||||||| ||| | || |||||||||| ||||||| ||||| |||||| Sbjct 2612139 CGGCACATGGGGCACTTGTCCGTCGACAGCGCGCACTTGGCGCACGCCACCACGTGCCCG 2612080 Query 24735 CACGGCACGAAGCACACGATTTTTTCATCGTAATAGCAAATCTTGCAAAGCTT 24787 |||||||||||||||||| | || || ||||| |||||||| ||||| Sbjct 2612079 CACGGCACGAAGCACACGTTGCGCTCCTCCGCGTAGCATATCTTGCACAGCTT 2612027 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 21141 GTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGCGT 21200 |||||| || ||||| ||||| || | ||||| |||||||||||| | || | | Sbjct 7349258 GTTGCCGAGGTCGCCAACGTGGCGTATGGTGGCGTTGGGAGCGCCGTGCTCCTGCTTGTT 7349317 Query 21201 AGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAAC 21260 ||||||||||| | || || || ||||||||||| || |||| || ||||| || || Sbjct 7349318 GGGGTTAAAGTGGGCCCCAGCAGATGTGCAGCCGTTTGTGTTGTCACCAAACTCATGCAC 7349377 Query 21261 GTGAAAGCCGTG 21272 ||| || ||||| Sbjct 7349378 GTGGAAACCGTG 7349389 >seq1114 Length=8361563 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || |||||||| | ||| ||||||| ||| | || || ||||| || || ||||| || Sbjct 2710524 TTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCG 2710465 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || ||| | || |||| |||||| || || | || | ||| |||||||| Sbjct 2710464 GACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGT 2710405 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TC 18990 || | |||||||||||| ||||||| |||||| | ||| ||| || |||| || Sbjct 2710404 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTC-AGAGGCTTC 2710346 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT-TTAAA 19047 || | || ||||||||||| || | ||||| || || || |||||| ||||| Sbjct 2710345 AACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATTGTTAAA 2710288 >seq3105 Length=7089461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34554 CGCGTGCTGCTTATGTCCATCAAGTGCGGCGGCGTGGGACTGAACTTAACCGGCGGCAAT 34613 |||||| |||| |||| | | | ||||||||||| |||||| | ||||| || Sbjct 124503 CGCGTGATGCTGCTGTCGCTGACGGCGGGCGGCGTGGGGCTGAACCTGTGCGGCGCCAGC 124444 Query 34614 CACATAATTATGTTGGAGCCCCACTGGAACCCGCAGATCGAACTGCAGGCGCAAGACCGC 34673 ||| | | || |||| || ||||||||||||||| | || | ||||||||| |||||| Sbjct 124443 CACCTGCTGCTGCTGGACCCGCACTGGAACCCGCAGCTGGAGCAGCAGGCGCAGGACCGC 124384 Query 34674 ATCCACCGCATGGGCCA 34690 | ||||| |||| || Sbjct 124383 GTGTACCGCGTGGGGCA 124367 >seq2310 Length=6428792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| |||| | ||| | | ||||| Sbjct 5747309 CACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTC 5747250 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||| || || | ||||| | ||||| || ||| | || || ||||| Sbjct 5747249 CAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTG 5747190 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | ||| || || ||||||| || | ||| ||||| || Sbjct 5747189 GATTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 5747130 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || ||||| || || ||||| Sbjct 5747129 GCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC--- 18889 |||| ||| | || || ||||| || || ||||| || | || ||| |||||| Sbjct 5744800 ACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGT----GCGTCCATC 5744745 Query 18890 -TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||||||||| || ||| | || | ||||||||| || ||| | |||||||||||| Sbjct 5744744 TTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5744685 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 ||| || || || | | | || || ||||||| || | ||| ||||| Sbjct 5744684 TTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGT 5744625 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || || || || |||||||| ||||| || Sbjct 5744624 CTTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTT 5744589 >seq5346 Length=541963 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| || ||||| |||| || | ||| || ||||||||||| ||||| Sbjct 231466 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 231407 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | || | ||| |||| |||||||| ||| | ||||||||||| || || Sbjct 231406 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 231347 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || ||||| || || || |||||| | | | |||||| ||| || Sbjct 231346 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 231287 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || || || |||||||| || || |||||||| ||||| Sbjct 231286 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| || ||||| |||| || | ||| || ||||||||||| ||||| Sbjct 360778 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 360837 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | || | ||| |||| |||||||| ||| | ||||||||||| || || Sbjct 360838 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 360897 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || ||||| || || || |||||| | | | |||||| ||| || Sbjct 360898 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 360957 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || || || |||||||| || || |||||||| ||||| Sbjct 360958 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414544646879368