Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3133 262 3e-65 seq5346 118 9e-22 seq2115 118 9e-22 seq2310 93.3 4e-14 seq1358 93.3 4e-14 seq1114 93.3 4e-14 >seq3133 Length=7630298 Score = 262 bits (290), Expect = 3e-65 Identities = 652/971 (67%), Gaps = 33/971 (3%) Strand=Plus/Minus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 101076 ||||| || || ||||||| ||||||||| | || || || | || |||||||||| Sbjct 1022572 TAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCTGTCGCGTTGCCTGTGAAG 1022513 Query 101077 --ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 101134 || || || ||| || | || || || ||||| ||||| |||||||| || || Sbjct 1022512 GGATTATTATCTTCGTAATTG--TGG-ACACCGGTCCAGCCGCGTCCGTACATAGCTACA 1022456 Query 101135 CCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGA---TTTAACAGCGTAA 101191 ||||| | ||| || |||| || || || | ||| | ||| ||| | | Sbjct 1022455 CCCACCACAATCTTCTTAGGGTTGACACCTTGA---GCAAGCAAATATTTCACACCAAAG 1022399 Query 101192 TCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCC 101251 || || |||| || || ||||||||| || ||||| || | ||| |||| || Sbjct 1022398 TCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCG 1022339 Query 101252 AG---ATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCG 101308 || |||| || ||||| ||||||||||| ||||| ||||| || || || | || Sbjct 1022338 AGGGTATCG---TTAGACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCC 1022282 Query 101309 AGGAACTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATT 101368 | | |||| || || | ||| | || || ||| || || || | |||||| Sbjct 1022281 ATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATA 1022222 Query 101369 GCACTTGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAAC-TCGTCCAGCATTGCGCG 101427 ||| || | |||||| | || || || | | | || |||| || |||| | || Sbjct 1022221 GCAGAGGTCAGCTCGTATTTCTTACCGGTCT-CTTCGGAAAGGTCGTTCAACATTTCACG 1022163 Query 101428 CAATTCTTTCAGTAAAATGTTGTACGTGT-CAGCGTCGCGTTCTTTGT--TGCCGAGTGT 101484 |||||| |||| ||| || |||| || | || ||| ||| | |||| || Sbjct 1022162 CAATTCCTTCATTAA----TTCAACGTAAACATC-TC-CGTCCTTGGGACTGCCAAGGTC 1022109 Query 101485 TGGGTTGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTT 101544 ||| || || || ||||| || || || ||||||||||| ||||| ||||| || || || Sbjct 1022108 TGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACTT 1022049 Query 101545 CCAAACCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGC-GTC-G 101602 ||| ||| | || ||||| ||||||||||| || | | | || || ||| | Sbjct 1022048 CCATGTCTGAAGGAAATCTTTCACAGAATCCACGAAGCGATCTC-TCTTCTCTTTGTCTG 1021990 Query 101603 TGCATATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGG 101662 || | | | |||| || || | | |||||||| |||||||| || | ||||||||| Sbjct 1021989 TGAAGAAGA-AGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGG 1021931 Query 101663 TGTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTC 101722 | || |||| ||| | ||| ||||||||||||||||||||||| ||||| ||| Sbjct 1021930 TCAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTC 1021871 Query 101723 CAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACT 101782 || | ||| | ||| || || || || || | || ||||| |||||||| || | |||| Sbjct 1021870 CAGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACT 1021811 Query 101783 TTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTT 101842 || |||||| ||||| ||| || ||||| | |||| ||||| || || Sbjct 1021810 TTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTCC 1021751 Query 101843 TTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGT 101902 || | |||||| | ||||||||| || ||||| || || || |||||||| | ||| Sbjct 1021750 TTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATGA 1021691 Query 101903 GAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCT 101962 | || || || | || || || || || || || | || || |||||||| Sbjct 1021690 GTCAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTCA 1021631 Query 101963 ACAAAATACGC 101973 || || ||||| Sbjct 1021630 ACGAAGTACGC 1021620 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23537 TTGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGC 23596 ||| ||||||||| ||| || || ||| | ||||| | |||||| || ||||| || || Sbjct 2611903 TTGTACGTAGTCGCGGCCTTTCACCAGCTGAACGTAAGCGCAGCGGTCGAACCAGCGCGC 2611844 Query 23597 GTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAA 23656 ||| | |||||||| ||||| | | |||||||| ||||||||||||||||| | || Sbjct 2611843 GTGCTGCTCCCACGGGACGTCGTCGTTCTCCCAGTCCTTGAGGCCGCCGTCGCAGTAGAA 2611784 Query 23657 ACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGG 23716 ||||| |||| || | ||||||||| | || ||||| || || | | ||| || Sbjct 2611783 GCATTTCGTTTTGTCCCCGTGGCCGGTGTAGAAGAAGCCGGCCTCCGCCAGCTCCTCGGG 2611724 Query 23717 CTTTTG 23722 || || Sbjct 2611723 TTTCTG 2611718 >seq5346 Length=541963 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 || ||||||| ||| || || ||||||||||||||| ||||||||| || || |||||| Sbjct 231466 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 231407 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | ||| || |||||||||||||| || ||| | ||||| |||||||| || Sbjct 231406 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 231347 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | |||||||| || || || ||| || | ||| || ||| |||||| Sbjct 231346 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 231287 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || || || || || || || || |||||||| ||||| Sbjct 231286 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 || ||||||| ||| || || ||||||||||||||| ||||||||| || || |||||| Sbjct 360778 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 360837 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | ||| || |||||||||||||| || ||| | ||||| |||||||| || Sbjct 360838 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 360897 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | |||||||| || || || ||| || | ||| || ||| |||||| Sbjct 360898 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 360957 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || || || || || || || || |||||||| ||||| Sbjct 360958 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq2310 Length=6428792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | | |||||| |||||||| ||||| ||||| || ||||| || | Sbjct 5745502 CCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTC--CG 5745445 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | || |||||| | || || |||||| | ||||| | || ||||| || Sbjct 5745444 AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGG 5745385 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| |||||| ||| || | ||| | || ||||| Sbjct 5745384 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAA 5745325 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || ||||||||||| ||||| || || |||||||| ||||| Sbjct 5745324 CCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || ||||| ||||| || || |||||||| || || ||| |||||| Sbjct 5745028 ACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCTTCC 5744969 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||||| ||| | || | ||||| || || ||| | |||||| ||||| Sbjct 5744968 AGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 5744909 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | || |||||| ||| | || ||||||||| Sbjct 5744908 ATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTG 5744849 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || |||||||| || ||||| Sbjct 5744848 CCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || ||||| ||||| || || |||||||| || || ||| |||||| Sbjct 5745256 ACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCTTCC 5745197 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || ||||| ||| | || | ||||| || || ||| | |||||| ||||| Sbjct 5745196 AGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 5745137 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | || |||||| ||| | || ||||||||| Sbjct 5745136 ATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTG 5745077 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || |||||||| || ||||| Sbjct 5745076 CCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 >seq1358 Length=322254 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 || ||||||| ||| || || ||||||||||||||| ||||||||| || || ||||| Sbjct 197 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCA 138 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | ||| || |||||||||||||| || ||| | ||||| |||||||| || Sbjct 137 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTC 82 >seq1114 Length=8361563 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 || |||||||| | |||||||||||| || ||||| ||||| || || |||||||| ||| Sbjct 2710524 TTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCG 2710465 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 || || ||||||||| |||||||| || | || | || || ||||| Sbjct 2710464 GACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGT 2710405 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||| |||||||| |||||| ||| || | | | || || | ||| Sbjct 2710404 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCA 2710345 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACT 20217 || | || |||||||| || || | ||||| || || || |||||| ||||||| Sbjct 2710344 ACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATTGTTAAACT 2710286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419558706357732