Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1673 232 6e-56 seq1390 232 6e-56 >seq1673 Length=160240 Score = 232 bits (256), Expect = 6e-56 Identities = 575/864 (67%), Gaps = 33/864 (4%) Strand=Plus/Plus Query 12876 CTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAG 12935 || |||| || || ||||||||||| || | | ||||||||||||||||||||||||| Sbjct 44717 CTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATAAAATCGAAAG 44776 Query 12936 GATT-----TTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990 |||| | | | | ||| ||| || | || | | || || |||||||| || Sbjct 44777 GATTGGCTGTGTTGTA-AATCTTATCTTCTCCA----AGGTTTATCAATAATCTGTCGGC 44831 Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050 ||||| || || || | ||| | | || |||||||| || | || || || | Sbjct 44832 TACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACTGGTAA 44891 Query 13051 AGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC-----TCTT 13105 | ||| ||||||| | || ||| || | ||||| || | ||| || || |||| Sbjct 44892 ACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGATATCCTTGATCTT 44951 Query 13106 ATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAG 13165 || | || || || || |||| | |||| || ||| ||||| || || Sbjct 44952 ATCGCATT---TATTG----ATAAGATAACTATTTAA----CAAACAAGCAAACTCGCAA 45000 Query 13166 TGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCT 13225 |||| |||||||||| || || || || |||||||| | | ||| ||||| || ||| Sbjct 45001 TGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCATGAGACCT 45060 Query 13226 CGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCT 13285 | ||| || | ||| || || | |||||| | || ||| || ||||||||||| Sbjct 45061 CTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCAACACAA 45120 Query 13286 GCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTCTGGC 13344 ||||| || || | || | || | ||| |||||| ||| || |||| || || Sbjct 45121 GCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTA-TCTTTAATCCATTTCAAAGC 45179 Query 13345 CCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT--ATTGCGTTAAATAAATAAttt 13402 ||| | || || | ||||| || | |||| | | || || |||| | || |||| Sbjct 45180 CCAATCAGCCTTCTTTTTAAT--AGATGGTATTGTGTTTATAGCATTAAGAAGATGATTT 45237 Query 13403 ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462 ||||| | || |||||| |||||||| | ||| ||||||||| ||||| ||| Sbjct 45238 TTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATA 45297 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAG 13522 ||||| || ||| ||||| |||||||||||| | |||||| | | ||||| | Sbjct 45298 TTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACTTCCTCG 45357 Query 13523 TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGT 13582 |||| ||||| | | || || || || || ||| |||||| ||||| ||||| Sbjct 45358 GAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGA 45417 Query 13583 ATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTT 13642 || || || ||| | | |||| | | || || |||||| ||||| | Sbjct 45418 ATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAATTCCAATCATATAAATCGGCT 45477 Query 13643 GATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCAT 13702 || | ||| || || ||| |||||||||||||| | || | || |||||| |||| Sbjct 45478 GAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATCTTCCAG 45537 Query 13703 ATATCCTTATAAACAAT-GGGAAA 13725 ||||| | ||| ||| |||||| Sbjct 45538 ATATCGTGATATTTAATAGGGAAA 45561 >seq1390 Length=76047 Score = 232 bits (256), Expect = 6e-56 Identities = 575/864 (67%), Gaps = 33/864 (4%) Strand=Plus/Minus Query 12876 CTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAG 12935 || |||| ||||| ||||||||||| || | | |||||||||||||| |||||||||| Sbjct 55069 CTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATGAAATCGAAAG 55010 Query 12936 GATT-----TTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990 |||| | | | | ||| ||| || ||| | | || || |||||||| || Sbjct 55009 GATTGGCTGTGTTGTA-AATCTTATCTTC----CCCAAGGTTTATCAATAATCTGTCGGC 54955 Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050 ||||| || || || | ||| | | || |||||||| || | || ||||| | Sbjct 54954 TACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACAGGTAA 54895 Query 13051 AGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC-----TCTT 13105 | ||| ||||||| | || ||| || | ||||| || | ||| || || |||| Sbjct 54894 ACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACAATATCCTTGATCTT 54835 Query 13106 ATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAG 13165 || | || || || || |||| | |||| || ||| ||||| || || Sbjct 54834 ATCGCATT---TATTG----ATAAGATAACTATTTAA----CAAACAAGCAAATTCGCAA 54786 Query 13166 TGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCT 13225 |||| |||||||||| || || || || |||||||| | | ||| ||||| || ||| Sbjct 54785 TGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCATGAGACCT 54726 Query 13226 CGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCT 13285 | ||| || | ||| || || | |||||| | || ||| || |||||||| || Sbjct 54725 CTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCGACACAA 54666 Query 13286 GCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCCACTTTCTGGC 13344 ||||| || || | || | || | ||| |||||| ||| | ||||| || || Sbjct 54665 GCAAATGCGATAACTCTGGTAGCAAAAGTAG-ATTTTTTGTCTTTTATCCATTTCAATGC 54607 Query 13345 CCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT--ATTGCGTTAAATAAATAAttt 13402 ||| | || || | ||||| || | |||| | | || || |||| | || |||| Sbjct 54606 CCAATCAGCCTTCTTTTTAAT--AGATGGTATTGTGTTTATAGCATTAAGAAGATGATTT 54549 Query 13403 ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462 ||||| | || |||||| |||||||| | ||| ||||||||| ||||| ||| Sbjct 54548 TTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATA 54489 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAG 13522 ||||| || ||| ||||| |||||||||||| | |||||| | | ||||| | Sbjct 54488 TTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACTTCCTCG 54429 Query 13523 TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGT 13582 |||| ||||| | | || || || || || ||| |||||| ||||| ||||| Sbjct 54428 GAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGA 54369 Query 13583 ATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTT 13642 || || || ||| | | |||| | | || || |||||| ||||| | Sbjct 54368 ATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAGTTCCAATCATATAAATCGGCT 54309 Query 13643 GATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCAT 13702 || | ||| || || ||| |||||||||||||| | || | || |||||| |||| Sbjct 54308 GAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATCTTCCAG 54249 Query 13703 ATATCCTTATAAACAAT-GGGAAA 13725 ||||| | ||| ||| |||||| Sbjct 54248 ATATCGTGATATTTAATAGGGAAA 54225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430953132523944