Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1673 237 4e-57 seq1390 233 4e-56 seq5346 188 2e-42 seq2115 188 2e-42 seq1358 158 3e-33 seq2310 131 4e-25 seq1114 123 6e-23 seq4120 102 2e-16 seq4138 91.5 3e-13 >seq1673 Length=160240 Score = 237 bits (262), Expect = 4e-57 Identities = 403/580 (69%), Gaps = 8/580 (1%) Strand=Plus/Minus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| |||| |||||||||||| |||| |||||||||||| | |||||||| ||| Sbjct 45542 GATATCTGGAAGATGTACAAACAAGCCGAATGTTCTTTTTGGACCGCTGAAGAAGTTGAT 45483 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 || || || ||| |||||||| ||||| |||||| |||||| ||| | || Sbjct 45482 CTTTCAGCCGATTTATATGATTGGAATTCTTTAACACCAGATGAAAGATACTTTGTTTCA 45423 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 |||||||||| ||||| || | | ||||||||| || || ||||| || || | | Sbjct 45422 CATATTCTTGCATTTTTCGCTGCTTCTGATGGTATTGTAAATATGAATCTTGTTGAAAGG 45363 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | | || || ||| || || | ||||||||| ||||||||| ||| ||| Sbjct 45362 TTTTCCGAGGAAGTCACCATTTTAGAGGCAAAATGTTTTTATGGATTCCAGGTAGTTATC 45303 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 |||||||| ||||| || ||||| | || | |||||||| ||||| |||| || Sbjct 45302 GAAAATATCCATTCTGAAATGTATTCTTTACTTATAGATACGTATATTAGTGATCCGGAC 45243 Query 269030 GAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 ||||| || || || | |||| | || || | | | | ||| || |||| Sbjct 45242 GAAAAAAATCATCTTCTTAATGCTATAAACACAATACCATCTATTAAAAAGAAGGCTGAT 45183 Query 269090 TGGGCTCTGAAATGGATAAACGAT---AGCGCGCCTTACG-GAGAAAGGTTAGTTGCTTT 269145 |||||| |||||||||| || ||| | | ||| | | | |||| | || || Sbjct 45182 TGGGCTTTGAAATGGATTAAAGATAAAAAATCTACTTTTGCTACCAGAGTTA-TCGCATT 45124 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 ||| ||| ||||| || |||||| || | ||||| | ||||| ||||| ||||| Sbjct 45123 TGCTTGTGTTGAAGGAATTTTCTTTAGTGGAGCATTTGCTTCGATCTTCTGGTTAAAGAA 45064 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 |||||| || ||||| || || | || || || ||| | || ||| | || |||||| | Sbjct 45063 AAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTTATTAGCCGAGATGAAGGTCT 45004 Query 269266 ACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTT 269305 || ||||| || |||||||| ||| | || ||||||| Sbjct 45003 GCATTGCGAGTTTGCTTGTTTGTTA---AATAGTTATCTT 44967 >seq1390 Length=76047 Score = 233 bits (258), Expect = 4e-56 Identities = 558/833 (67%), Gaps = 18/833 (2%) Strand=Plus/Plus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| |||| |||||||||||| |||| |||||||||||| | |||||||| ||| Sbjct 54244 GATATCTGGAAGATGTACAAACAAGCCGAATGTTCTTTTTGGACCGCTGAAGAAGTTGAT 54303 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 || || || ||| |||||||| ||||| |||||| |||||| ||| | || Sbjct 54304 CTTTCAGCCGATTTATATGATTGGAACTCTTTAACACCAGATGAAAGATACTTTGTTTCA 54363 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 |||||||||| ||||| || | | ||||||||| || || ||||| || || | | Sbjct 54364 CATATTCTTGCATTTTTCGCTGCTTCTGATGGTATTGTAAATATGAATCTTGTTGAAAGG 54423 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | | || || ||| || || | ||||||||| ||||||||| ||| ||| Sbjct 54424 TTTTCCGAGGAAGTCACCATTTTAGAGGCAAAATGTTTTTATGGATTCCAGGTAGTTATC 54483 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 |||||||| ||||| || ||||| | || | |||||||| ||||| |||| || Sbjct 54484 GAAAATATCCATTCTGAAATGTATTCTTTACTTATAGATACGTATATTAGTGATCCGGAC 54543 Query 269030 GAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 ||||| || || || | |||| | || || | | | | ||| || |||| Sbjct 54544 GAAAAAAATCATCTTCTTAATGCTATAAACACAATACCATCTATTAAAAAGAAGGCTGAT 54603 Query 269090 TGGGCTCTGAAATGGATAA---ACGATAGCGCGCCTTACG-GAGAAAGGTTAGTTGCTTT 269145 ||||| |||||||||||| || | | | ||| | | | |||| | || || Sbjct 54604 TGGGCATTGAAATGGATAAAAGACAAAAAATCTACTTTTGCTACCAGAGTTA-TCGCATT 54662 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 ||| ||| ||||| || |||||| || | ||||| | ||||| ||||| ||||| Sbjct 54663 TGCTTGTGTCGAAGGAATTTTCTTTAGTGGAGCATTTGCTTCGATCTTCTGGTTAAAGAA 54722 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 |||||| || ||||| || || | || || || ||| | || ||| | || |||||| | Sbjct 54723 AAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTCATTAGCCGAGATGAAGGTCT 54782 Query 269266 ACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTT-TCACACAAACCTTCTCAAG 269324 || ||||| || |||||||| ||| | || ||||||| ||| | ||| | | | Sbjct 54783 GCATTGCGAATTTGCTTGTTTGTTA---AATAGTTATCTTATCA-ATAAA--TGC----G 54832 Query 269325 ATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAG 269384 ||| | | || ||| | | | || || | ||| ||||||| ||| ||| Sbjct 54833 ATAAGATCAAGGATATTGTTGTTGAGGCAGTAAAAATCGAACAAGAATTTTTAAGTGAAA 54892 Query 269385 CTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCG 269444 | || || | ||||||| || |||||| ||||| ||| | |||||| | || | Sbjct 54893 GTTTACCTGTTAATCTTATTGGAATGAATTGCAAACTTATGTGCAATTATATTGAATTTG 54952 Query 269445 TATCTGATAGATTGCTGGT-GTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCG 269503 || | || ||||| || | | || ||| | ||| | || ||| | ||||| Sbjct 54953 TAGCCGACAGATTATTGATAAACCTTGGGGAAGA-TAAGATTTACAACACAGCCAATCCT 55011 Query 269504 TTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 || ||| ||||| ||||| ||| | | ||||| | || ||||| || || Sbjct 55012 TTCGATTTCATGGAAAATATTTCACTTGTTGGTAAAACAAACTTCTTTGACAA 55064 >seq5346 Length=541963 Score = 188 bits (208), Expect = 2e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||||| |||| |||||| ||||||||||| || ||| Sbjct 231463 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 231404 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| ||| |||||| | |||||| |||||||| || || |||||||| || ||||| Sbjct 231403 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 231344 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| || ||||| ||||||||||| || | ||||| ||||||||| Sbjct 231343 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 231284 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| || || | ||| |||||||| |||||||| Sbjct 231283 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 188 bits (208), Expect = 2e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||||| |||| |||||| ||||||||||| || ||| Sbjct 360781 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 360840 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| ||| |||||| | |||||| |||||||| || || |||||||| || ||||| Sbjct 360841 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 360900 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| || ||||| ||||||||||| || | ||||| ||||||||| Sbjct 360901 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 360960 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| || || | ||| |||||||| |||||||| Sbjct 360961 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1358 Length=322254 Score = 158 bits (174), Expect = 3e-33 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||||| |||| |||||| ||||||||||| |||||| Sbjct 194 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAGAT 135 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| ||| |||||| | |||||| |||||||| || || |||||||| || ||||| Sbjct 134 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 75 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| ||||| || ||||| ||||||||||| || | ||||| ||||||||| Sbjct 74 ATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 15 Query 104513 TC 104514 || Sbjct 14 TC 13 >seq2310 Length=6428792 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||| || | |||| ||| ||||| || || ||||| ||||| Sbjct 5745505 ATGCCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCC 5745446 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || ||||| || || | || ||||| || Sbjct 5745445 GAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGG 5745386 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || |||||||||||||| | || || ||||| Sbjct 5745385 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCA 5745326 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| ||| || || || || || | || || ||||| |||||||| Sbjct 5745325 ACCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 >seq1114 Length=8361563 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| ||||| | || | || | ||| ||||| ||||| || || ||||| || Sbjct 2710521 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGAC 2710462 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || ||||| | ||||| || || || || | || || ||||| || || Sbjct 2710461 AATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 2710402 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||| || ||||| || |||||||||||||| | || || | ||| ||| Sbjct 2710401 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 2710342 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || ||||| ||||| |||||||| || ||||||||| Sbjct 2710341 TCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 >seq4120 Length=16292344 Score = 102 bits (112), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 268851 ATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGT 268910 || || | || |||||||| | | ||||||||| ||||| || |||||||||||| | Sbjct 7436576 ATGTTTTGGCATTTTTTGCTGCTTCTGATGGTATAGTTAATGAGAATCTAGTAGAGCGAT 7436517 Query 268911 TCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAG 268970 | | ||||| || || ||| |||||| || | ||||| |||||||| || ||||| | Sbjct 7436516 TTTCACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTATGGATTCCAAATTGCTATGG 7436457 Query 268971 AAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | ||| | || || ||||||||| | | || |||||||| || Sbjct 7436456 AGAATGTACACTCTGAGATGTACTCCTTGCTGATTGATACTTACAT 7436411 >seq4138 Length=8783011 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 78528 TAGATACTATCTTCTTCATCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTAT 78587 |||| ||||||||||| |||| || |||||||| || ||| | | ||||||||||||| Sbjct 4821356 TAGACACTATCTTCTTTGTCCTTCGCAAGAAATTCAACCAAGTGACGTTTCTACATGTAT 4821297 Query 78588 ATCATCATTTTACTATGTTTACTTTGGGATGGATA 78622 |||| || |||| |||| || ||| ||| |||||| Sbjct 4821296 ATCACCACTTTATTATGGTTGCTTGGGGCTGGATA 4821262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151316200228976