Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3133 232 6e-56 seq2310 84.2 2e-11 >seq3133 Length=7630298 Score = 232 bits (256), Expect = 6e-56 Identities = 632/963 (66%), Gaps = 11/963 (1%) Strand=Plus/Plus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCC 30291 ||||| || || |||||||| ||| ||| ||| || | || || || | || Sbjct 1021623 TACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTACCAATTCCT 1021682 Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 || || || ||||||||||| || ||| | || | ||||| || ||||| || ||||| Sbjct 1021683 AATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAACGAC 1021742 Query 30352 AGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAG 30411 || || ||| || | || || | ||| | ||| ||| ||| || || || Sbjct 1021743 AGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGCGAA 1021802 Query 30412 GATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTG 30471 ||||| ||||| | ||||||||| |||| |||||||| || |||||||| || | Sbjct 1021803 GATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGTCTT 1021862 Query 30472 GGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACAC 30531 | ||| | || || || ||||| || ||||| || |||||| | ||||| | | Sbjct 1021863 TCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAAGCC 1021922 Query 30532 AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTTT 30591 | || ||||||| || |||| || || || || ||||| ||| || || ||||| Sbjct 1021923 AGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCCCTTCTTC 1021982 Query 30592 AAATTGAGTTCTGCC---GAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTTG 30648 || | | | | || || | | ||||| || || | ||| | | Sbjct 1021983 TTCTTCA---CAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGATTTCCTT 1022039 Query 30649 CGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGGT 30708 | |||||||| || || ||||| |||| ||||| ||||| || || |||||||| || Sbjct 1022040 CAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGGA 1022099 Query 30709 GCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTGAAA 30768 |||||||| || | || ||| ||||| |||| || || | ||| |||| Sbjct 1022100 GCTAATCCAGACCTTGGCAGTCC---CAAGGACGGAGATGTTTACGTTGAATTAATGAAG 1022156 Query 30769 GAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCACC 30828 || | | |||||| | ||||| ||||| |||| || || || |||||| |||| ||| Sbjct 1022157 GAATTGCGTGAAATGTTGAACGACCTTTCCGAAGAGACCGGTAAGAAATACGAGCTGACC 1022216 Query 30829 TCGGCGATTAGCGCGGGGTACGATAAAATCTCTA-TAGTTAATTATGAAAATGCGCAAGA 30887 || || ||||| || || | ||||| || || | | || |||| | || || | Sbjct 1022217 TCTGCTATTAGTGCTGGATGGGATAAGAT-TCAAGTTGTCGATTACAGTGAGGCTCAGAA 1022275 Query 30888 GTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAACACGGA 30947 ||| | || ||||| || |||||| ||||| || |||||||| ||||||||| Sbjct 1022276 GTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAGGCGCCTGGTCTAACGATAC 1022335 Query 30948 CTTGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATATACTGC 31007 | | || |||| ||| | ||||| | ||| |||||||| || | |||| || || | Sbjct 1022336 CCTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGAACCCTAAGGAAACTTACACAAC 1022395 Query 31008 CGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTGCTAGC 31067 || | | || | ||| | ||| ||||| |||||| || ||| | | Sbjct 1022396 TGACTTTGGTGTGAAATATTTGCTTGCTCAAGGTGTCAACCCTAAGAAGATTGTGGTGGG 1022455 Query 31068 TGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAATCCCTT 31127 ||| || ||||||||| | || ||||| ||||| || | || | || |||||||| Sbjct 1022456 TGTAGCTATGTACGGACGCGGCTGGACCGGTGTCCACAATTACGAAGATAATAATCCCTT 1022515 Query 31128 TACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGTAGATTACAA 31187 || || || || || | ||||| |||||| || || || || ||||||| Sbjct 1022516 CACAGGCAACGCGACAGGACCTGTCAAAGGTACTTGGCAAGACGGTGTAGTTGATTACAG 1022575 Query 31188 AGA 31190 ||| Sbjct 1022576 AGA 1022578 >seq2310 Length=6428792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||||||| ||||| || |||||||| |||| |||| ||| |||| ||| Sbjct 5745256 ACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCTTCC 5745197 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | |||||| || || | | ||||||||| Sbjct 5745196 AGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 5745137 Query 48638 ATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||| |||| | | || || || | | ||| || | ||| |||||||| Sbjct 5745136 ATTTT-TGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTT 5745078 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || || ||||| |||||||| Sbjct 5745077 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421222593357572