Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1248 104 3e-17 seq1205 104 3e-17 seq1838 89.7 6e-13 seq1389 86.0 7e-12 seq2469 84.2 3e-11 >seq1248 Length=515940 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| ||| |||| || ||||| ||||||||| ||||||||| || || ||| || Sbjct 297968 AATCCCTCAAATGGGAGATAAATTTGCTTCTAGACATGCTCAAAAGGGGACCATTGGGAT 297909 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | | ||||||||||||||| |||||| || || ||||| || ||| ||||||| Sbjct 297908 TACACTCCCTCAAGAAGATATGCCCTTTACTTCTGAAGGGATAGTCCCTGATATTATTAT 297849 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||| || |||||| |||| ||| ||||||| Sbjct 297848 TAATCCTCATGCTATTCCTAGTAGAATGAC 297819 >seq1205 Length=221829 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| ||| |||| || ||||| ||||||||| ||||||||| || || ||| || Sbjct 147598 AATCCCTCAAATGGGAGATAAATTTGCTTCTAGACATGCTCAAAAGGGGACCATTGGGAT 147657 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | | ||||||||||||||| |||||| || || ||||| || ||| ||||||| Sbjct 147658 TACACTCCCTCAAGAAGATATGCCCTTTACTTCTGAAGGGATAGTCCCTGATATTATTAT 147717 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||| || |||||| |||| ||| ||||||| Sbjct 147718 TAATCCTCATGCTATTCCTAGTAGAATGAC 147747 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| ||| |||| || ||||| ||||||||| ||||||||| || || ||| || Sbjct 152999 AATCCCTCAAATGGGAGATAAATTTGCTTCTAGACATGCTCAAAAGGGGACCATTGGGAT 153058 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | | ||||||||||||||| |||||| || || ||||| || ||| ||||||| Sbjct 153059 TACACTCCCTCAAGAAGATATGCCCTTTACTTCTGAAGGGATAGTCCCTGATATTATTAT 153118 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||| || |||||| |||| ||| ||||||| Sbjct 153119 TAATCCTCATGCTATTCCTAGTAGAATGAC 153148 >seq1838 Length=309293 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAA-ATAGGTGATAAGTTTGCTTCTTTTA 19388 ||| || ||||| ||| |||| || ||| ||| ||||| ||||||||| ||| | Sbjct 111690 TAATATCAAATTCAGAATATCTAGAA-ACCCGAATATAGGAGATAAGTTTTGTTCCCGTC 111632 Query 19389 CTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAG 19448 || |||||||| ||| |||| | | | | |||||||||||||| ||| Sbjct 111631 ATGGACAAAAAGGTGTTTGTTCTATGCACTGGCCTACAATCGATATGCCTTTTACAGAAG 111572 Query 19449 ATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACG 19504 ||||| || || ||| | |||||||| || ||||||||||||||||| |||||| Sbjct 111571 GAGGTATTGTACCTGATATCATTATTAATCCTCATGCTTTTCCAAGTCGTATGACG 111516 >seq1389 Length=93236 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 ||| || ||||| ||| |||| || || | ||||| |||||||| ||| | Sbjct 82940 TAACATCAAATTCAGAATATCTAGAAATCCAAATATAGGAGATAAGTTCTGTTCCCGTCA 82999 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| |||| || | | | |||||||||||||| ||| Sbjct 83000 TGGACAAAAAGGTGTCTGTTCTATGCATTGGCCTACAATCGATATGCCTTTTACAGAAGG 83059 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACG 19504 ||||| || || ||| | |||||||| || ||||||||||||||||| |||||| Sbjct 83060 GGGTATTGTACCTGATATCATTATTAATCCTCATGCTTTTCCAAGTCGTATGACG 83114 >seq2469 Length=3733711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 || ||| |||| ||||||||||| ||||| | | |||||| || || || || || Sbjct 1710674 ATTCCTCAAATCGGTGATAAGTTCGCTTCACGTCACGGTCAAAAGGGAACCTGCGGAATC 1710733 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 || | |||||||||||||| |||||| || || | ||||| |||||||| Sbjct 1710734 CAATACAGACAAGAAGATATGCCATTTACTTGTGAAGGCCTTACACCGGACATTATTATT 1710793 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 |||||||| ||| ||||| ||| ||||| Sbjct 1710794 AACCCACACGCTATTCCATCTCGTATGAC 1710822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595830497515200