Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3121 132 3e-26 seq5411 125 4e-24 seq3128 120 2e-22 seq1924 120 2e-22 seq1114 120 2e-22 seq2310 116 2e-21 seq2289 114 7e-21 seq1481 105 3e-18 seq2605 98.7 5e-16 seq2524 86.0 3e-12 >seq3121 Length=9531028 Score = 132 bits (146), Expect = 3e-26 Identities = 83/90 (92%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 703219 AATAAAAAAGTAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 703160 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 703159 GACGCTCTAACCAACTGAGCTAATGGGCCG 703130 >seq5411 Length=5890689 Score = 125 bits (138), Expect = 4e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||||| || ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 4491577 TTAAAAAAAAAATAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 4491518 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 4491517 ACGACGCTCTAACCAACTGAGCTAATGGGCC 4491487 Score = 123 bits (136), Expect = 1e-23 Identities = 83/93 (89%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||| Sbjct 4492913 ATTAACAAAAAG---AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 4492969 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||| ||||||||||||||||||||| Sbjct 4492970 CACGACGCTCTAACCAACTGAGCTAATGGGCCG 4493002 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 4488673 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 4488732 Query 11514 ACTGAGCTAATGGGCCGT 11531 |||||||||||||||||| Sbjct 4488733 ACTGAGCTAATGGGCCGT 4488750 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4299895 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4299954 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| || Sbjct 4299955 TGAGCTAATGGGCCGTTGA 4299973 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 4487961 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 4488020 Query 11514 ACTGAGCTAATGGGCCG 11530 ||||||||||||||||| Sbjct 4488021 ACTGAGCTAATGGGCCG 4488037 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4429420 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4429479 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 4429480 CTGAGCTAATGGGCCG 4429495 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4285456 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4285515 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 4285516 TGAGCTAATGGGCCG 4285530 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4487793 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4487734 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 4487733 TGAGCTAATGGGCCG 4487719 >seq3128 Length=5114887 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 4784666 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4784607 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 4784606 CAACTGAGCTAATGGGCC 4784589 >seq1924 Length=7285565 Score = 120 bits (132), Expect = 2e-22 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3882189 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3882130 Query 11516 TGAGCTAATGGGCCGTCGAC 11535 |||||||||||||||| ||| Sbjct 3882129 TGAGCTAATGGGCCGTTGAC 3882110 >seq1114 Length=8361563 Score = 120 bits (132), Expect = 2e-22 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 983591 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 983650 Query 11516 TGAGCTAATGGGCCGTCGACGAT 11538 ||||||||||||||| |||||| Sbjct 983651 TGAGCTAATGGGCCGATGACGAT 983673 Score = 116 bits (128), Expect = 2e-21 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 984133 AAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 984074 Query 11513 AACTGAGCTAATGGGCCGTCG 11533 |||||||||||||||||| || Sbjct 984073 AACTGAGCTAATGGGCCGACG 984053 >seq2310 Length=6428792 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3226781 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3226722 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 3226721 TGAGCTAATGGGCCGT 3226706 >seq2289 Length=8021128 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 542581 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 542640 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 542641 TGAGCTAATGGGCCG 542655 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 5567917 AAAAAGCTGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 5567858 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 5567857 CTCTAACCAACTGAGCTAATGGGCC 5567833 >seq1481 Length=369223 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||| Sbjct 120255 TTGGCCCATGAGGGGATCGTACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 120314 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||| ||| Sbjct 120315 CTGAGCTAATGTGCC 120329 >seq2605 Length=5020101 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| ||||||| || ||||| | ||||||||||||||||||||| |||||| Sbjct 1436097 TGGCCCATGAGGGGATCGATCCCGCGACCCTTGCGTTATTAGCACGACGCTCTAACCAAC 1436038 Query 11516 TGAGCTAATGGGCCGT 11531 | |||||||||||||| Sbjct 1436037 TAAGCTAATGGGCCGT 1436022 >seq2524 Length=6099401 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11438 ATTAATAA-AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| || ||||| || | |||||||||| |||||||||| ||||| || ||||| Sbjct 6034175 ATTAAAAATAAAATGAATTGTTGGCCCATGAGGGGATCGAACCCGGGACCTGCGTGTTAT 6034116 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||||||| ||| |||||||||| Sbjct 6034115 TAGCACGACGCTCTAACCGTCTGAGCTAAT 6034086 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473442459472