Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_006644.1 Length=16103 Score E Sequences producing significant alignments: (Bits) Value seq2387 1052 0.0 >seq2387 Length=6194718 Score = 1052 bits (1166), Expect = 0.0 Identities = 1135/1496 (76%), Gaps = 55/1496 (4%) Strand=Plus/Plus Query 4619 TACAGCCTAATTATTTTTCGACAATATTTTGATGTTTGCCTCTCATTTCTTGCATTTTGT 4678 ||||||||||||| ||| ||| |||||||| |||||| ||| || || | || |||| Sbjct 3888901 TACAGCCTAATTAGTTTCCGA---TATTTTGACGTTTGCTTCTAATGTCGTACAATTTGC 3888957 Query 4679 TACGAATAGTGTTCAAAATCAGCTGCGAATCAAATTCAACCCATTTTTGCCCAGTCGCAT 4738 ||||||| | || | ||| | | ||||||||||| | |||||||||| ||| ||||| Sbjct 3888958 CACGAATACTTTTAATAATTAAGTTCGAATCAAATTTACGCCATTTTTGCTCAGCCGCAT 3889017 Query 4739 GTTTTTTAACATAGTTCAATAAAACAGTTCTTGCATGTTCATCTAGACCGGGCCTTACAC 4798 | ||| || || |||||||||||| || |||||||||||||||||||||||||| | Sbjct 3889018 GCATTTGAATGTAATTCAATAAAACATTTAATGCATGTTCATCTAGACCGGGCCTTATAA 3889077 Query 4799 TTGTTCCCTCCAAGTCAA-ATGCATTGGCtttttttCCAGTTAGAGAACATATACTTAAT 4857 ||||| | ||| | || || |||| |||| ||||| |||||||||||| ||||| Sbjct 3889078 TTGTTGC-TCC---TGAATATATTTTGGATTTTACTCCAGGAAGAGAACATATAGTTAAT 3889133 Query 4858 GCGTTCTCGGTAAAAATTTCCAGTAACAACGATCGTGCAAGAGTTTTGCTGTCTTTCGAC 4917 ||||||||| |||||||| | ||||||| ||||||||| | ||| ||| |||| Sbjct 3889134 GCGTTCTCGCTAAAAATTAGGAATAACAACTTTCGTGCAAGGGCATTGTGGTCCCACGAC 3889193 Query 4918 ATTATTTTAATATTACTTAGTTGAATGGCGTCTATGTACACCCGTGAATGTGGTAGAAGT 4977 ||||| || || |||| |||||| || || |||||| |||||| |||||| ||| Sbjct 3889194 GTTATTATACAATGTCTTAATTGAATTTTGTTTACGTACACACGTGAAGCTGGTAGCAGT 3889253 Query 4978 TCAACGAGACCACTTTTCTTTTCCCGATGCTTTAGGGTCCATCTTGAGTCATTCGGATCG 5037 || || |||||| ||| ||||||| ||| ||||||||||||||||| |||||||||||| Sbjct 3889254 TCGACAAGACCAATTTCCTTTTCCTGATATTTTAGGGTCCATCTTGAATCATTCGGATCG 3889313 Query 5038 TATTCTGGTGGAAAAATAAATTTGCGTGCTTGACCACGGATCTTATTCAGTGGATTATTA 5097 || |||||||| |||||||| ||||| ||||||| | || | |||| ||||||| || Sbjct 3889314 TACTCTGGTGGTAAAATAAAATTGCGCGCTTGACTATTGACC---TTCAATGGATTAATA 3889370 Query 5098 TTTTTAACTTCTGTACCGTCACTGT---------TGTGTTTCTTCTCTTCGTTTTTTCGA 5148 |||| |||||||||||||||||| | | |||| | | ||| | |||||| Sbjct 3889371 TTTTCAACTTCTGTACCGTCACTATTTCCTACACTATGTTCCATTTCTCCAGTTTTTCCT 3889430 Query 5149 GTATCATTTTGTAATTTTGATTCGGTTACTTTAT-CTGA-----------ATCGTTTTCA 5196 | |||||| ||||||| || ||| | | | ||| ||| |||| | Sbjct 3889431 GAATCATT------TTTTGATCCGCTTATTGTGTGATGAAGTAGATTAACATCATTTTTA 3889484 Query 5197 TTTATATTTACTTCCATCATACTATTTTCTAATTCTTTGACTGTAGAATCTAGATCACTA 5256 ||||||| | ||||||| || |||||||| |||| | |||| ||||||||||||||| Sbjct 3889485 TTTATATCCAGTTCCATCGCACAATTTTCTATTTCTCTCACTGCTGAATCTAGATCACTA 3889544 Query 5257 ATATTAGGACCATTACTGACTTCATCCGTTAGGTCAATCAACCCTTTTATGATCTTACAA 5316 || | || || ||| || |||| | |||| || || || ||| |||| |||| | Sbjct 3889545 ATGTCAGAACTATTTTTGGCTTCGTTAATTAGATCGATAAATTGTTTAGTGATGTTACTA 3889604 Query 5317 TTTTCCATAAACGCAAGCCGCATTTTCTCTAATACTAATTGGtttttttCATA-ATTACT 5375 | || |||||||| | | || ||| || || | |||||| || || ||| | | || Sbjct 3889605 TGTTTCATAAACGAATCCTGCTTTTCCTTAAAGAATAATTGTTTATTATCAAACGCTTCT 3889664 Query 5376 ATGAAGTTGTTCCAATTTTTCTTTGAAGTTATCACCAAAGACTGACCGTAGAGCCGTTAC 5435 || ||||||||||||||||||| | |||||||||||| | |||| ||||||| ||| Sbjct 3889665 -TGTAGTTGTTCCAATTTTTCTTCGTAGTTATCACCAAGTATTGACTCTAGAGCCATTAT 3889723 Query 5436 AATTTGCCATTTTCTTATTAACTCTGAAGAATTTTTGACTGATAGTTCATTTTCTTGGTT 5495 | |||| |||| | | |||| ||||| || || ||||| | ||||||||||| || Sbjct 3889724 ATTTTGATATTTAGTGACTAACATGGAAGAGTTATTTGCTGATGGATCATTTTCTTGATT 3889783 Query 5496 GTTGTTAGCCGTATTGCTCTCTTCAACACAATGGCTAGTTTTCTGAAGATTCTCTTTTGT 5555 ||||||| | || |||| |||||||||||||||||| |||||||||||||||| Sbjct 3889784 ATTGTTAGTCTTA------TCTTTTACACAATGGCTAGTTTTCGGAAGATTCTCTTTTGT 3889837 Query 5556 AGTTTGATCTGGCAAACTAACGGTATTATTGCCTGATAAAGATATTCTGAGTGACTGTCT 5615 |||| ||||||| ||| | | ||| || |||| |||||||||||||| |||| | | | Sbjct 3889838 AGTTGGATCTGGTAAATTTATGGTGTTGTTGCTTGATAAAGATATTCCATGTGAGTTTTT 3889897 Query 5616 TGTCAAATATCTTCTGGCTTTGGGGGAGGAATCGGCAGTTCCAACTTTACTTTCCGTTCG 5675 || || |||||||||||||||| || ||||||||| | ||| |||||||| || | Sbjct 3889898 TG---AACATCTTCTGGCTTTGGGAGATGAATCGGCAACTTCAATTTTACTTTTACTTTG 3889954 Query 5676 GCCTATTCTTACCTCGACATTAGTCAAGTCTAGTTGCTTTGGTATTTCTTCACTCACTGG 5735 | |||||| |||| | ||| |||||||| || | || |||||||| |||| Sbjct 3889955 GTTTATTCTCCCCTCTGCTTTAATCAAGTCTGGTATTTCTGTTATTTCTTTTAGAACTGC 3890014 Query 5736 CTCCGCATCACTGTTTAGAGTTAAAGTTGTACGGACTTTGTTTGATTCTGAGCTCGATTG 5795 | |||||||||||||||||| || |||||| ||||||||||| ||||||||||||||| Sbjct 3890015 TTTAGCATCACTGTTTAGAGTTGAAATTGTACTGACTTTGTTTGTTTCTGAGCTCGATTG 3890074 Query 5796 TGATTCGAGTACTTTCTTGTCCGATGTTGATGGTACATCTGGAATGTAATTTTTAACTAT 5855 ||| || | ||||| ||||| ||||| || ||||||||||||| | |||||||||| || Sbjct 3890075 TGACTCAAATACTTCCTTGTTGGATGTGGAAGGTACATCTGGAAAGCAATTTTTAACAAT 3890134 Query 5856 TAGCGACCTAATCAAAAAGAAATACTTTTAAATGTCAACAGAACAATAGATACCTTTGAC 5915 ||||||| | |||||||||| |||||||||||| |||| ||||| |||| || ||| Sbjct 3890135 TAGCGACTT-----AAAAGAAATATTTTTAAATGTCATCAGACCAATACATACTTTCGAC 3890189 Query 5916 TATTTCCATGCTGCTCTGCTCTTGATCAAATATTTTATTCAGTATCTTGATAAAGTTTCT 5975 ||||||| ||||||| ||||||| ||| |||||| ||||||||||||||||| |||| Sbjct 3890190 TATTTCCGTGCTGCTTTGCTCTTCATCGAATATTATATTCAGTATCTTGATATAGTTGAC 3890249 Query 5976 TGCGTCTTTATATGAGTCTATAAAAAATAGT-TTTAAGTATTCAGACCATATCGAATTAC 6034 |||||||| ||| || |||||||| | | | || || | | | ||| || |||||| Sbjct 3890250 TGCGTCTTCATAGGACACTATAAAATAAATTATTCTAGAACCAAAAGCATGTCAAATTAC 3890309 Query 6035 CCTCTGAGGCTTGTATTATTGACAGGGAAGTATCACCAGTTCAGATTTAGAATAGA 6090 | ||| | ||||| |||||| |||||||||||||||| ||||| || ||| ||| Sbjct 3890310 CATCTAAAACTTGTTTTATTGTGAGGGAAGTATCACCAGCTCAGAATTGGAAAAGA 3890365 Score = 461 bits (510), Expect = 8e-126 Identities = 659/926 (71%), Gaps = 118/926 (13%) Strand=Plus/Plus Query 6220 AATGTTTACAACTTACTCGTACTGTATTTTATATTAGCCAAAAATACTGTCCAGTTTTCT 6279 ||||||||| ||||| |||||||||||||||||| ||||| | || ||||| || Sbjct 3891662 AATGTTTAC---TTACTTGTACTGTATTTTATATTACCCAAATGAAGTGGTAAGTTTCCT 3891718 Query 6280 AAGAATTCTTGTTTTTCAACACGTTTCTTTATTTCTGATAGTTCTTC---AACGGGAAAT 6336 ||||||||| ||| |||| | | | |||||||||| || |||||| | | ||||| Sbjct 3891719 GAGAATTCTTTTTTCTCAAAATATGTATTTATTTCTGGTATTTCTTCGTTAGCAGGAAAA 3891778 Query 6337 TTGACAAGAGCTGGACCATCTGATGTTTCACGTAACCTTATCCAAGAATTCGGAATGCAA 6396 | |||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 3891779 TGTACAAGAACTGGACCATCTGATGTTTCACGTAAAAATATCCGAGAATTCGGAACGCAC 3891838 Query 6397 ACATATTTTTCTGGATCTATGTATGGAGGTTCCAATAATTCAATCACATGAAACTTAAAC 6456 || |||||||| ||| ||||| || | |||| ||||| |||||||||||||| |||||| Sbjct 3891839 ACGTATTTTTCAAGATGTATGTTTGAATGTTCTAATAACTCAATCACATGAAAGTTAAAC 3891898 Query 6457 TCTTTCTGTTTGCTCATCTGAAAATAAATCGTTAAATTAATCAATAAAAATGCAAAGCAT 6516 || || ||| |||||||| |||||| || || || ||||| ||||||||| Sbjct 3891899 TCATTTTGTGGACTCATCTGGAAATAATTCATTTAAATAATCTATAAAAATG-------- 3891950 Query 6517 CTAAGATGGCGCCCATACACCCACAGACTCGCTTGTCGGACGGAAAAATTTGGTATTCAA 6576 | ||| | ||||||||| | || ||| ||| ||||| ||||||| | Sbjct 3891951 ------------CTATATATCCACAGACTAGGTTATCGAACGAAAAAAAATGGTATTTCA 3891998 Query 6577 TGACGTAGACTAAGTATGTTTAGAAACTGTTTACATTAATTTTTAAATTTGGAACAAAAT 6636 | ||||| || | || ||| | ||||| |||| || ||||||||||||||||||||| Sbjct 3891999 TAACGTATTCTTAATAGGTTAAAAAACTCTTTA---TATTTTTTAAATTTGGAACAAAAT 3892055 Query 6637 CTTTTTCGATTATTGAAAATCACAACGATTATTTATGGCTTTTATTTTACTTCATATCTT 6696 ||||| |||||| | | || ||| | || || ||||||||||| || | | ||| Sbjct 3892056 CTTTTACGATTAATTATAACCACGA--AT------TGTCTTTTATTTTATTTTACAACTT 3892107 Query 6697 TTTGTAAAAAATTAATTCtttttttCAAATAGCCTGTTGAATGTGGACTCAGCTTAATTC 6756 || |||| |||||| ||| || | ||||| || Sbjct 3892108 TT-------CATTA-----TTTTTTTAAACAG-----TTAATGTTGA------------- 3892137 Query 6757 TCACAATAAAACCGGTTTTCCTCGAATTCAATTATACACAGCACCAAT------TATTAA 6810 |||| |||||||| |||| || |||| |||| |||||| || |||| | | || Sbjct 3892138 -CACATTAAAACCGATTTTGTTCAAATTAAATTCTACACAACAACAATAAAATATCTAAA 3892196 Query 6811 AATAGCTTACGTTTAGATGCCAACTTTGTGTCTGCTGTCCAAGCAATTGAGCTGATTCCA 6870 |||| |||||||||| || ||||||||| || ||||||| |||||| |||||| Sbjct 3892197 AATATCTTACGTTTA---GCTAACTTTGTG--TGTTGTCCAATTAATTGA----ATTCCA 3892247 Query 6871 ATAATATGGCTTGGTAAAGTTTAGGAAATACTGTTTTCACTGTGACCTTAAACTCTCTTA 6930 | || || | ||| |||||||||| || || ||||| ||||| | | | ||||| | Sbjct 3892248 A-AAAATAG-TTGAAAAAGTTTAGGTAACACCGTTTTTACTGTAATTTCATCTTCTCTCA 3892305 Query 6931 ATAAAATCGATAGAGAAAGAAATATTTTTGTAACGTTTACGTTGCGAGACGTCTGTTATC 6990 |||||| ||| |||||| ||||| || || |||||||||| ||||||||||||||||| Sbjct 3892306 GTAAAATTGAT-GAGAAA-AAATA--TTCGTTACGTTTACGTCGCGAGACGTCTGTTATC 3892361 Query 6991 GCGCACGACAAGGACGCTTACTGAGGAGAATTGGAACTGTAGGAGTTTTATTAATATTAA 7050 || || |||||| | |||||| |||| ||||| | || Sbjct 3892362 ACGTAC-ACAAGGCC----ACTGAG------TGGA--------------TTTAATGTGAA 3892396 Query 7051 TAGATGCGCGAGTGCGAAAAAGATAGTTATAAATTACACAGCTTGTGTCGGTGTTATTAG 7110 ||||| |||||| |||| ||||||||||| || ||||| |||| || ||||| | Sbjct 3892397 TAGATTAGCGAGTATGAAAGAGATAGTTATATATATCACAGTTTGTTTC--ATTTATTTG 3892454 Query 7111 TCACAGGCAGGTCGATAATTGCGTCA 7136 | ||||||| |||||||||||||| Sbjct 3892455 T--CAGGCAGCCCGATAATTGCGTCA 3892478 Score = 361 bits (400), Expect = 6e-96 Identities = 316/392 (81%), Gaps = 17/392 (4%) Strand=Plus/Plus Query 6125 AAACATAGTGGAAGTTGAACTGTTTACCAAATCGTATCAGATACTATCTGCTCGCTACCC 6184 |||||||| | | |||| | ||||| ||||||||||||| |||||||| | ||||| | Sbjct 3890556 AAACATAGCGAAGGTTGTAGTGTTTGCCAAATCGTATCATGTACTATCTTGTTGCTACAC 3890615 Query 6185 AAAAAAGAGGCCCTACAGTAAACAAATAAAACGATAATGTTTACAACTTACTCGTACTGT 6244 ||||| |||||| |||||||| ||| || | |||||||||| ||||||| Sbjct 3890616 AAAAA-GAGGCC------------AATAAAACAATAGTGGTCACAACTTACTTGTACTGT 3890662 Query 6245 ATTTTATATTAGCCAAAAATACTGTCCAGTTTTCTAAGAATTCTTGTTTTTCAACACGTT 6304 |||||| ||||||||| | | | | ||||| || ||||||||||||| ||| || || Sbjct 3890663 ATTTTAGGTTAGCCAAATAAAGTTTTAAGTTTCCTGAGAATTCTTGTTTCGCAATACATT 3890722 Query 6305 TCTTTATTTCTGATAGTTCTTC---AACGGGAAATTTGACAAGAGCTGGACCATCTGATG 6361 |||||||||||| ||||| ||| | ||||||| | |||||| ||||||||||||||| Sbjct 3890723 TCTTTATTTCTGGTAGTTTTTCGTTACCGGGAAAATGTACAAGAACTGGACCATCTGATG 3890782 Query 6362 TTTCACGTAACCTTATCCAAGAATTCGGAATGCAAACATATTTTTCTGGATCTATGTATG 6421 ||| |||||| |||||||||||||||||| ||| ||||||||||| | |||||| || Sbjct 3890783 TTTTACGTAAAATTATCCAAGAATTCGGAACGCACACATATTTTTCAACAACTATGTTTG 3890842 Query 6422 GAGGTTCCAATAATTCAATCACATGAAACTTAAACTCTTTCTGTTTGCTCATCTGAAAAT 6481 |||||||| | ||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 3890843 ACGGTTCCAAAATTTCAATCACATGAAACTTAAACTGATTTTGTTTACTCATCTGAAAAT 3890902 Query 6482 AAATCGTTAAATTAATCAATAAAAATGCAAAG 6513 ||||| || |||||||| ||||||||| |||| Sbjct 3890903 AAATCATT-AATTAATCGATAAAAATGTAAAG 3890933 Score = 241 bits (266), Expect = 1e-59 Identities = 208/257 (81%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 5759 AAGTTGTACGGACTTTGTTTGATTCTGAGCTCGATTGTGATTCGAGTACTTTCTTGTCCG 5818 || ||||||||||||| || | ||||| | |||||||| || | ||||||||| | | Sbjct 3891171 AAATTGTACGGACTTTTCTTCCTCCTGAGGTGGATTGTGACTCAAATACTTTCTTCTTGG 3891230 Query 5819 ATGTTGATGGTACATCTGGAATGTAATTTTTAACTATTAGCGACCTAATCAAAAAGAAAT 5878 | || |||| ||||||||||| | |||||||||| ||||||||| ||| ||||||| Sbjct 3891231 AAGTAGATGATACATCTGGAAAGCAATTTTTAACAATTAGCGACTTAA-----AAGAAAT 3891285 Query 5879 ACTTTTAAATGTCAACAGAACAATAGATACCTTTGACTATTTCCATGCTGCTCTGCTCTT 5938 ||||||||||||||||||| ||||| |||| || |||||||||| ||||||| ||||||| Sbjct 3891286 ACTTTTAAATGTCAACAGACCAATACATACTTTCGACTATTTCCGTGCTGCTTTGCTCTT 3891345 Query 5939 GATCAAATATTTTATTCAGTATCTTGATAAAGTTTCTTGCGTCTTTATATGAGTCTATAA 5998 ||| || ||| |||||||||||||| || |||| |||| |||| | | || |||||| Sbjct 3891346 CATCGAACATTATATTCAGTATCTTGGTATAGTTGATTGCATCTTCAAAGGACACTATAA 3891405 Query 5999 A---AAATAGTTTTAAG 6012 | ||||||||||||| Sbjct 3891406 AAACAAATAGTTTTAAG 3891422 Score = 105 bits (116), Expect = 7e-19 Identities = 91/112 (81%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 15397 TACCAGTAACGCTTTTGAAATCGAAAACTAAGGGACATTAACTATTGTGGTCCATGAATA 15456 |||||| | |||||||||||| |||| || ||||||| |||||||||||||||| ||| Sbjct 3887486 TACCAGGAGCGCTTTTGAAATTGAAATCTGAGGGACAATAACTATTGTGGTCCAAAAATG 3887545 Query 15457 ATTCCTTTTCTACAG--TAATTGTTGTAATGGTTTCAGATTGGGGTATTCAA 15506 ||||||||||||| ||||| ||| |||||| |||||| | ||| ||| Sbjct 3887546 TATCCTTTTCTACAGTTTAATTATTGGTATGGTTGGAGATTGAGTTATCCAA 3887597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51407887769176