Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1673 318 6e-82 seq1390 316 2e-81 seq3143 104 2e-17 seq4120 102 9e-17 >seq1673 Length=160240 Score = 318 bits (352), Expect = 6e-82 Identities = 624/918 (68%), Gaps = 24/918 (3%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||||||| | | || |||| ||||| || ||||| || || | | ||| ||| Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||||||||| || ||||| | | || | || |||| || || | | || Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTCCAAGGTTTATCAA 44819 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||| || ||||||||||| ||||| | ||||| | || |||||||| || || | Sbjct 44820 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 44879 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 || || || | | || | ||||| || ||| || || || ||||||| || Sbjct 44880 ATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT 44939 Query 21424 ATTTATTATCCTAG---ATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGC 21480 || | ||| || || || | |||| |||| | ||||| |||||| || Sbjct 44940 ATCCTTGATCTTATCGCATTTATT-----GATAAGATAACTATTTAA----CAAACAAGC 44990 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 ||| || ||||||| ||||||||| | || || | |||||| ||||| | ||||| || Sbjct 44991 AAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGG 45050 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCC 21600 ||| | ||||| || |||||||| || || || ||||||||||| ||||||||| || Sbjct 45051 CATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCC 45110 Query 21601 CTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCA 21660 ||||| ||||||||| | | || | | | ||||||| |||||| ||||| Sbjct 45111 TTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCA 45170 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 ||| ||||| | ||||| | ||||||| | ||||| | ||||| || | ||| Sbjct 45171 TTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAG 45230 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 |||||||||||| || ||| | || | |||||||||||| Sbjct 45231 ATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGA 45290 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT--TGA 21838 ||| |||||||| || ||| ||| ||||| ||||||||| |||||||| || || ||| Sbjct 45291 ATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCT-AAAATGGTGA 45349 Query 21839 --ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||||| |||| | || | | | || |||||| || |||||| || || | Sbjct 45350 CTTCCTCGG---AAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGA 45406 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 ||||||| | |||| | | ||| |||| ||| | |||||| |||||||| Sbjct 45407 AAAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAATTCCAATCAT 45466 Query 21957 ATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTT-TTTA 22015 ||||||| ||| | ||| |||||||||| |||||||| | || | | ||| ||| Sbjct 45467 ATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAA-AGAACATTCGGCTTGTTTG 45525 Query 22016 TACATAATCCAGATATCATTATATATTATTGGAAATATTAC-AAACCTGTTATTTGATTC 22074 ||||| |||||||||| | |||| | || || || | || || | |||| || | Sbjct 45526 TACATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTGTTTCTTTA-GG 45584 Query 22075 AACTAAAAGTGGTTCCAT 22092 | ||||||||||||| || Sbjct 45585 ATCTAAAAGTGGTTCTAT 45602 >seq1390 Length=76047 Score = 316 bits (350), Expect = 2e-81 Identities = 626/920 (68%), Gaps = 28/920 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||||||| | | || |||| || || || ||||| || || | | ||| ||| Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTT--AAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| ||||| || ||||| | | || |||| || | || | || || | | Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCC--CCAAGGTTTATC 54969 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 |||||||| || ||||||||||| ||||| | ||||| | || |||||||| || || Sbjct 54968 AATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATA 54909 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || ||||| | | || | ||||| || ||| || || || ||||||| Sbjct 54908 AGATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACA 54849 Query 21422 ATATTTATTATCCTAG---ATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 |||| | ||| || || || | |||| |||| | ||||| |||||| Sbjct 54848 ATATCCTTGATCTTATCGCATTTATT-----GATAAGATAACTATTTAA----CAAACAA 54798 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| || ||||||| ||||||||| | || || | |||||| ||||| | ||||| Sbjct 54797 GCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCA 54738 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||||| || |||||||| || || || ||||||||||| ||||||||| Sbjct 54737 GGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATT 54678 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || || ||||||||| | | || | | | ||||||| ||| || |||| Sbjct 54677 CCTTCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATC 54618 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 ||||| |||||| | ||||| | ||||||| | ||||| | ||||| || | | Sbjct 54617 CATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGA 54558 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 |||||||||||||| || ||| | || | |||||||||| Sbjct 54557 AGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCA 54498 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT--T 21836 ||||| |||||||| || ||| ||| ||||| ||||||||| |||||||| || || | Sbjct 54497 GAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCT-AAAATGGT 54439 Query 21837 GA--ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 || |||||| |||| | || | | | || |||||| || |||||| || || Sbjct 54438 GACTTCCTCGG---AAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGC 54382 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 |||||||| | |||| | | ||| |||| ||| | |||||| |||||||| Sbjct 54381 GAAAAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAGTTCCAATC 54322 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTT-TT 22013 ||||||| ||| | ||| |||||||||| |||||||| | || | | ||| || Sbjct 54321 ATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAA-AGAACATTCGGCTTGTT 54263 Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTAC-AAACCTGTTATTTGAT 22072 | ||||| |||||||||| | |||| | || || || | || || | |||| || | Sbjct 54262 TGTACATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTGTTTCTTTA- 54204 Query 22073 TCAACTAAAAGTGGTTCCAT 22092 | ||||||||||||| || Sbjct 54203 GGATCTAAAAGTGGTTCTAT 54184 >seq3143 Length=6417446 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 131864 ATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGAT 131923 |||||||| || ||||||||| ||||| | ||| | ||| |||| | || || | Sbjct 4746390 ATGACTCCAGTATTACCTATGTTAGCTGAAGCATGTAAGTCTGTAGAGATGGCTATGAAG 4746331 Query 131924 AAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAATTCAT 131983 |||| | | ||||||||| || || ||||||||||||| ||| | || ||| ||||| Sbjct 4746330 AAATGTCCAAATGGAATGTTCTCGGAAATAAAATATGATGGAGAGAGAGTGCAAGTTCAT 4746271 Query 131984 AAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCATAAA 132043 || | || | || || ||| |||||| | || ||||||||| ||| | |||||||| Sbjct 4746270 AAGAGAGGTTCTGAATTCAAATATTTTTCTCGAGCTTTAAAACCCGTTATGGCTCATAAA 4746211 >seq4120 Length=16292344 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||||||| || | ||||| || || | ||| |||||||| || | ||| || Sbjct 7436009 TCATCCCTAGAAATCAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCACGCTTCTTC 7436068 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 ||||| |||||||||||||| ||| |||||||| |||||||| || |||||||| ||| Sbjct 7436069 AACCAGAATATTGACGCAAAGCTTCCAGAAAAGAAGATGCCCTCCACAGCAGCAAAGGCA 7436128 Query 21620 ACTAATCGTTCACC 21633 |||| | |||||| Sbjct 7436129 ACTATCCTTTCACC 7436142 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||| ||||| |||| ||| || || || || || ||||| ||||| | ||||| || Sbjct 7436435 TACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCA 7436494 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | |||||| || ||||||| | | | || ||||| ||||| |||||| Sbjct 7436495 CCAATTTGAACTTCTTGTGAAAATCGCTCTACTAGATTCTCATTAACTATACCATCAGAA 7436554 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || |||||||||||||| | || ||| ||||| | | || ||| |||| ||| | Sbjct 7436555 GCAGCAAAAAATGCCAAAACATGTTTAATAAAGTGCCTCTCACAATCCTTTAAACTTTCC 7436614 Query 21950 CAATCTAATAAATC 21963 |||||| ||||||| Sbjct 7436615 CAATCTGATAAATC 7436628 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| || |||||||||| ||| |||||||| | || ||||| | ||| || Sbjct 7434623 TTAAAACTCCGCATCTAATGTGAATACATTATCCATCCTGTTGGACATCACCCCCCACTT 7434682 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT-AGATT 21245 ||| || || | ||| | || || || || |||||||| || || |||||||| ||||| Sbjct 7434683 TTGGTACTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTGCCCTCTAATGATATCAGATT 7434742 Query 21246 CCATAAAATCAAATGGATT 21264 | || || ||||||||||| Sbjct 7434743 C-ATGAAGTCAAATGGATT 7434760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531863753109280