Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3133 327 1e-84 seq2310 111 2e-19 seq5346 109 5e-19 seq2115 109 5e-19 seq4120 102 8e-17 >seq3133 Length=7630298 Score = 327 bits (362), Expect = 1e-84 Identities = 815/1219 (67%), Gaps = 34/1219 (3%) Strand=Plus/Plus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 ||||| || | || || || || |||||||| || || || ||||| || ||||| ||| Sbjct 1021608 AAAGTTGTCGGAGCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGAT 1021667 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || || || | ||||||||| | ||| || | || || |||||||| || ||||| ||| Sbjct 1021668 CGTGTACCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGC 1021727 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 || ||||| ||||||||| | ||| || || ||||| |||||||||| || || Sbjct 1021728 GATGGCATCAACGACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCA 1021787 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || || || || || || ||||| || ||||| || ||||||||||| | ||||| Sbjct 1021788 TGCAGCGGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAG 1021847 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 |||||||| | | | ||||| || ||||||||||| || |||||||| ||||| Sbjct 1021848 CCACAAAAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATG 1021907 Query 62339 GCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATTA 62398 | |||| || | ||| || ||||| | ||||||| || || |||||||| | Sbjct 1021908 TCTCTTAAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTT 1021967 Query 62399 TCCGATCCGTTCTTTTATTTTCAC-GATGTGGCCAAACGCAAGAT--TTTTGTCGATTCC 62455 | ||||| ||||| | | ||||| || | | | | |||| || || ||||| Sbjct 1021968 GCAGATCCCTTCTTCT-TCTTCACAGACAAAG--AGAAGAGAGATCGCTTCGTGGATTCT 1022024 Query 62456 GTCATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTT 62515 || | ||| || | ||||| ||||| || ||||| ||||| || ||||||||||| || Sbjct 1022025 GTGAAAGATTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTC 1022084 Query 62516 CCCGGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTAC 62575 || ||||| || || || ||||| || | ||| ||| | | || || || | || Sbjct 1022085 CCTGGCGGTAAGGGAGCTAATCCAGACCTTGGC--AGTCCCAAG-GA-CG-GAGATGTTT 1022139 Query 62576 ACGAT--TCTGTTGAGAGATTTACGCGAAGCCCT---CGACCGTCTCTCAATCGAAACGA 62630 ||| | | ||| || || || ||| | ||||| | || || || || Sbjct 1022140 ACGTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACC-TTTCCGAA--GAGACCG 1022196 Query 62631 ATCGAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCG 62690 | | ||||| |||| || || || || || || || ||| || |||| Sbjct 1022197 GTAAGAAATACGAGCTGACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCG 1022256 Query 62691 ATTACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAG 62750 |||||| ||| || || || || |||| | || || | |||| ||||| ||||||| Sbjct 1022257 ATTACAGTGAGGCTCAGAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAG 1022316 Query 62751 GAGCTTGGTCGAATAGCGAT---TTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTA 62807 | || ||||| || |||| | || |||| || | || ||||| || | | | Sbjct 1022317 GCGCCTGGTC---TAACGATACCCTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGA 1022373 Query 62808 ACCCTAAAGAGCATTATACGACCGATTTTGCCGTTCGTGCTATGCTCAAGCAAAAAGTCG 62867 ||||||| || ||| || || || |||| || | |||| ||| ||| Sbjct 1022374 ACCCTAAGGAAACTTACACAACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGTGTCA 1022433 Query 62868 AAAACAAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTG 62927 | || |||||| | || || || || |||||||| || || |||||||| ||| Sbjct 1022434 ACCCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGTC---C 1022490 Query 62928 ACTTTGTCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTACCT 62987 || | ||| || |||||||| || | |||| || | ||||| |||||||||| | Sbjct 1022491 ACAATTACGAAGATAATAATCCCTTCACAGGCAACGCGACAGGACCTGTCAAAGGTACTT 1022550 Query 62988 GGGAGGACGGAGTCGTCGATTATAGAGAGATTTTTAATTCTTT---TGTGGGTAAAGACG 63044 || | ||||| || || ||||| ||||| || ||| | | |||| || | | Sbjct 1022551 GGCAAGACGGTGTAGTTGATTACAGAGAAATAGCAAATGAAATCGCTATGGGGAA--ATG 1022608 Query 63045 GCATTAATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAACGCGACCGGCG 63104 | | | | ||| ||| | | || |||| | ||||| || | |||| || | Sbjct 1022609 GGAGT-TCCATTATGATAACGTTGCCGAAGCTCCTTACGTGTTCAGGCCATCGACTGGTG 1022667 Query 63105 ATCTCATAACCTACGACAGTCCTCAGTCGGTTCTGGATAAAGCAAAATATGTTTTGGACT 63164 | | ||||| ||||| | ||||| ||| | | || |||| || ||||| || Sbjct 1022668 ACTTAATAACGTACGATAATCCTCGATCGACTATTGAGAAAGGCAAGTATGTGAGAAACA 1022727 Query 63165 ATAATCTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCTAAACG 63224 |||| ||||| ||| | |||||||||||||| ||||| ||||| || || |||||| Sbjct 1022728 ATAAGCTGGGCGGTTTATTCGCGTGGGAGATTGATGCAGACAATGGTGAACTATTAAACG 1022787 Query 63225 CAATGAACAGCGGTCTCGG 63243 | ||||||| |||||||| Sbjct 1022788 CCATGAACATGGGTCTCGG 1022806 >seq2310 Length=6428792 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||| ||||| | ||||| ||||| | ||| | | Sbjct 5746188 ATGCAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746247 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 5746248 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746307 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || ||||||||| || ||||||| | | | || ||| ||||| Sbjct 5746308 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAAT 5746367 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 || |||||||| || || |||| |||| Sbjct 5746368 ATCCAAAAAGAGTCCACCCTCCACTTGGT 5746396 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || ||||| ||||| | |||||| |||| | ||| | Sbjct 5745731 AATGCAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTC 5745790 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 5745791 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCA 5745850 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | ||||| | || ||||||||| || ||||||| | | | || ||| || || Sbjct 5745851 GCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACAA 5745910 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| || ||||| || |||| |||| || Sbjct 5745911 CATTCAGAAGGAATCCACACTCCACTTGGTACT 5745943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | || ||| | ||| | ||| | Sbjct 5745960 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCT 5746019 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 5746020 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746079 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||||||||| || || |||| | | || ||||| ||| Sbjct 5746080 CAGAGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAAC 5746139 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || |||||||| || || |||| |||| ||| Sbjct 5746140 ATCCAAAAAGAGTCCACCCTCCACTTGGTACTG 5746172 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || ||||| ||||| | ||||| ||||| | ||| | | Sbjct 5746872 ATGCAGATCTTCGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746931 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 5746932 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746991 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || ||||||||| | || |||| | | || ||||| ||| Sbjct 5746992 CAACGTCTCATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCGGACTACAAC 5747051 Query 26949 ATTCAAAAAGAATCTAC 26965 || ||||| || || || Sbjct 5747052 ATCCAAAAGGAGTCCAC 5747068 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | || ||| | ||| | ||| | Sbjct 5746644 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCT 5746703 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || ||||| || || || || || Sbjct 5746704 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAG 5746763 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||||||||| || || |||| | | || ||||| ||| Sbjct 5746764 CAGAGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAAC 5746823 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || |||||||| || || |||| |||| ||| Sbjct 5746824 ATCCAAAAAGAGTCCACCCTCCACTTGGTACTG 5746856 >seq5346 Length=541963 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| |||||||| ||||| | ||||| | ||| ||||| | Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| ||||| || |||||||| || ||||| || ||| Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || |||||| | ||||| |||| | | ||| ||||| Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||||||| ||| | ||| |||| | ||| | |||||||| || Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 231466 >seq2115 Length=629047 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| |||||||| ||||| | ||||| | ||| ||||| | Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| ||||| || |||||||| || ||||| || ||| Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || |||||| | ||||| |||| | | ||| ||||| Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||||||| ||| | ||| |||| | ||| | |||||||| || Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 360778 >seq4120 Length=16292344 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| ||||| ||||| |||||| | || || | ||||| | ||| || || || || | Sbjct 14704162 AAACTCATGACGAACTGTGGAATTCAGCACAACTGCAGCTGCTCAAAGAAGGCAAGATGC 14704103 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 | || | | ||||||||||||| ||| |||||||| || ||||| | | ||| ||| Sbjct 14704102 ATGGCTTTATGCGCATGTACTGGGGCAAGAAGATTCTAGAATGGACACCGAGTCCAGAGG 14704043 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | || ||| | ||| | || ||| |||| ||| |||||| | || || | || |||| Sbjct 14704042 ATGCACTCAAATATGCAATATATTTAAATGATCATTACAGTATAGATGGAAGAGACCCTA 14703983 Query 71850 ACGGTTATG 71858 | || |||| Sbjct 14703982 ATGGATATG 14703974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478629061163840