Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1673 174 4e-38 seq1390 168 2e-36 seq1114 140 8e-28 >seq1673 Length=160240 Score = 174 bits (192), Expect = 4e-38 Identities = 355/525 (68%), Gaps = 12/525 (2%) Strand=Plus/Minus Query 22419 CACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACG 22478 ||| || | ||| ||||| || ||||| |||||||| |||||||||| || || || Sbjct 45213 CACAATACCATCTATTAAAAAGAAGGCTGATTGGGCTTTGAAATGGATTAAAGATAAAAA 45154 Query 22479 TTCA---TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG 22535 || || || | |||| ||||||||| |||||||| ||||||||| ||| Sbjct 45153 ATCTACTTTTGCTACCAGAGTTATCGCATTTGCTTGTGTTGAAGGAATTTTCTTTAGTGG 45094 Query 22536 AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTC 22595 ||||||| | | ||||| ||| |||| ||| | | | ||||| ||| | ||||||| Sbjct 45093 AGCATTTGCTTCGATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTC 45034 Query 22596 AAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCG 22655 |||||| | |||||||||||||| ||||| ||| ||| ||||| ||| || || || | Sbjct 45033 AAATGAACTTATTAGCCGAGATGAAGGTCTGCATTGCGAGTTTGCTTGTTTGTTAAATAG 44974 Query 22656 GAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGT 22715 ||| ||||| ||||| | | ||| || | ||||| || | ||||| Sbjct 44973 TTATCTTATCA---ATAAA-TGCGATAAGA-----TCAAGGATATCGTTGTTGAGGCAGT 44923 Query 22716 TGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGC 22775 || | |||| |||| | | || |||||||| | ||| ||||| || ||| Sbjct 44922 AAAAATCGAACAAGAATTTTTAAGTGAAAGTTTACCAGTTAATCTTATTGGAATGAATTG 44863 Query 22776 CGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTA 22835 | || ||| | | |||||| ||||||| || || | |||| || || || | Sbjct 44862 CAAACTTATGTGCAATTATATTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGAGA 44803 Query 22836 TGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895 | ||| ||| ||| | ||||| || || | |||||| ||||||||||| || Sbjct 44802 AGATAAGATTTACAACACAGCCAATCCTTTCGATTTTATGGAAAATATTTCACTTGTTGG 44743 Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || || || |||||||| |||| || | | || |||||||| Sbjct 44742 TAAAACAAACTTCTTCGACAAAAAAGAATCTCAGTATCAAAAAGC 44698 >seq1390 Length=76047 Score = 168 bits (186), Expect = 2e-36 Identities = 354/525 (67%), Gaps = 12/525 (2%) Strand=Plus/Plus Query 22419 CACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGA 22475 ||| || | ||| ||||| || ||||| |||||||| |||||||||| || ||| | Sbjct 54573 CACAATACCATCTATTAAAAAGAAGGCTGATTGGGCATTGAAATGGATAAAAGACAAAAA 54632 Query 22476 ACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG 22535 | | | || || | |||| ||||||||| || ||||| ||||||||| ||| Sbjct 54633 ATCTACTTTTGCTACCAGAGTTATCGCATTTGCTTGTGTCGAAGGAATTTTCTTTAGTGG 54692 Query 22536 AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTC 22595 ||||||| | | ||||| ||| |||| ||| | | | ||||| ||| | ||||||| Sbjct 54693 AGCATTTGCTTCGATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTC 54752 Query 22596 AAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCG 22655 |||||| | |||||||||||||| ||||| ||| ||| ||||| ||| || || || | Sbjct 54753 AAATGAACTCATTAGCCGAGATGAAGGTCTGCATTGCGAATTTGCTTGTTTGTTAAATAG 54812 Query 22656 GAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGT 22715 ||| ||||| ||||| | | ||| || | |||||| || | ||||| Sbjct 54813 TTATCTTATCA---ATAAA-TGCGATAAGA-----TCAAGGATATTGTTGTTGAGGCAGT 54863 Query 22716 TGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGC 22775 || | |||| |||| | | || ||||| || | ||| ||||| || ||| Sbjct 54864 AAAAATCGAACAAGAATTTTTAAGTGAAAGTTTACCTGTTAATCTTATTGGAATGAATTG 54923 Query 22776 CGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTA 22835 | || ||| | | |||||| ||||||| || || | |||| || || || | Sbjct 54924 CAAACTTATGTGCAATTATATTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGGGA 54983 Query 22836 TGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895 | ||| ||| ||| | ||||| || || | |||||| ||||||||||| || Sbjct 54984 AGATAAGATTTACAACACAGCCAATCCTTTCGATTTCATGGAAAATATTTCACTTGTTGG 55043 Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || || || ||||| || |||| || | | || |||||||| Sbjct 55044 TAAAACAAACTTCTTTGACAAAAAAGAATCTCAGTATCAAAAAGC 55088 >seq1114 Length=8361563 Score = 140 bits (154), Expect = 8e-28 Identities = 536/829 (65%), Gaps = 16/829 (2%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||| |||| | || ||||||||| | ||| | || | ||||| |||||| | || Sbjct 3015417 ATTGCTGAAAGACCCCAGCATATGCTGATGAGAGTCTCAATTGGAATCCATGGTGAAGAC 3015358 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACG 363561 ||||||| || |||||||| || || | | || ||||| || |||| Sbjct 3015357 ATTGATGCAGCTATTGAAACTTACAATTTGTTGTCTGAAAAATATTTCACTCATGCCAGT 3015298 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || ||| ||| || | ||||| | ||||| | ||||||||||| || || Sbjct 3015297 CCCACATTGTTTTCCGCCGCAACTCCAAGACCACAATTATCTTCTTGCTTCCTCATAGCT 3015238 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| |||||||| | ||||||||| || | ||||| || || ||| Sbjct 3015237 ATGAAAGATGACAGCATTGAGGGTATATATGACACACTAAAACAATGTGCCCTAATCTCC 3015178 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAG-AACAGTTACAT 363740 || ||| || || || || | || || ||| || | | || | || || ||||| Sbjct 3015177 AAATCTGCTGGTGGTATAGGACT-TC-ATGTACATTG--CAT-CAGGGCAAAAGGTACAT 3015123 Query 363741 ---TCGC-GGCAC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 | || || || | || | | || ||||| || || || ||| | | |||| | Sbjct 3015122 ATATAGCAGGTACTAATGGTGTT--TCCAATGGCCTTGTGCCAATGTTGAGAGTGTACAA 3015065 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 ||||| || ||||| || ||||| || || || || ||| || || ||||| || Sbjct 3015064 TAATACAGCCAGGTATGTTGACCAAGGAGGCAACAAACGACCAGGAGCATTCGCTATTTA 3015005 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 || || ||| || | ||| ||||||||||| | || || || || || || || Sbjct 3015004 CCTTGAACCTTGGCACTCTGATGTTTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAA 3014945 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| || | | ||| | || | || ||||| | ||| | | || |||||||| Sbjct 3014944 AGAAGAGGTCAGAGCAAGAGAATTATTTTATGCCTTATGGATCCCAGATTTATTTATGAA 3014885 Query 363975 GCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 ||| || || || | | | ||| || | || || || || || || |||||| | Sbjct 3014884 GCGGGTTGAAAAAGATGAAATGTGGAGTCTAATGTGTCCTCATGATTGCCCGGGTCTTGC 3014825 Query 364035 CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 ||| ||||| || || | || || | || ||||| |||||| ||| |||| Sbjct 3014824 TGATTGTTGGGGAGAAGAATTTGAAGCATTGTATGAAAAATATGAACAGGA-AAAAAGAT 3014766 Query 364095 TCGTAAGACAATTCC-CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 | || | ||| ||| || || | ||||| || || || || | || | || | Sbjct 3014765 TTGTTAAGCAAGTCCGAGCTCAAGAATTATGGAAAGCAATAATAGAAGCACAAGTGGAAA 3014706 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 |||| ||||| || ||| ||||||||||||| || ||| | || || || | | | Sbjct 3014705 CAGGCACACCATACATGCTGTACAAAGATTCATGTAACAGAAAAAGTAATCAAAAAAATC 3014646 Query 364214 TTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 |||| |||||| | || || | || || || ||| |||| ||||| Sbjct 3014645 TTGGCACAATTAAATGCAGTAATTTGTGCACAGAAATTGTTGAGTACAC 3014597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303260551957304