Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3133 325 3e-84 seq5346 116 3e-21 seq2115 116 3e-21 seq2310 104 2e-17 seq1358 89.7 4e-13 >seq3133 Length=7630298 Score = 325 bits (360), Expect = 3e-84 Identities = 797/1200 (66%), Gaps = 20/1200 (2%) Strand=Plus/Plus Query 55830 GCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCACT 55889 || || || || || |||||||| || | ||||| || ||||| ||| || || | | Sbjct 1021620 GCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTACCAATT 1021679 Query 55890 CCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAAC 55949 ||||||||| | || || | ||||| || || || || ||||| ||||| ||||| ||| Sbjct 1021680 CCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAAC 1021739 Query 55950 GACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGA 56009 |||||| | ||| || || ||||| |||| ||||| ||||| || || || Sbjct 1021740 GACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1021799 Query 56010 GACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAA 56069 || || |||||||| || ||||| || ||||||||||| | || ||||| ||||| Sbjct 1021800 GAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGT 1021859 Query 56070 GTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCTAAACTG 56129 | | | ||||| || |||||||||||||||||||| || ||||| | ||||| Sbjct 1021860 CTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAA 1021919 Query 56130 GCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCCGATCCGTTC 56189 || | || | ||||| | || ||||| ||||||||||||||| | | ||||| ||| Sbjct 1021920 GCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCCCTTC 1021979 Query 56190 TTTTACTTTCAC-GATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGAGTTTTT 56248 || | | ||||| || | || | | || || |||||||| || || | Sbjct 1021980 TTCTTC-TTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGATTTCCT 1022038 Query 56249 ACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAGGG 56308 ||||| ||||| || ||||| ||||| || ||||| ||||| || || ||||| ||||| Sbjct 1022039 TCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGG 1022098 Query 56309 GGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACACGATTCTGTTACG 56368 || ||| | || | ||| | || | || | | || ||| | | | | Sbjct 1022099 AGCTAATCCAGACCTTGGCAGTCCCAAGGACG-----GAGATGTTTACGTTGAATTAATG 1022153 Query 56369 A--GATTTACGCGAAGCGCTAGACCGA-CTAAGCCTCGAAACGAATCGAACATACGAGCT 56425 | || || || ||| | | || ||| || | || || | | ||||||||| Sbjct 1022154 AAGGAATTGCGTGAAATG-TTGAACGACCTTTCCGAAGAGACCGGTAAGAAATACGAGCT 1022212 Query 56426 AACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACACAGCCGCTCA 56485 ||| || ||||| || || || || || || ||||| |||| | ||||| Sbjct 1022213 GACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCGATTACAGTGAGGCTCA 1022272 Query 56486 AAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCGAATAG 56545 || || | || | || || | |||| ||||| || |||||||| ||||| || Sbjct 1022273 GAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAGGCGCCTGGTC---TAA 1022329 Query 56546 CGAT---CTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACACTA 56602 |||| || || ||||||| | | ||||| || || | || ||||| ||| || Sbjct 1022330 CGATACCCTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGAACCCTAAGGAAACTTA 1022389 Query 56603 TACGACCGATTTTGCGGTTCGTGCTCTGCTTAAACAAAAAGTCGAGAATAAAAAGATTGT 56662 || || || |||| || | ||||| ||| ||| | ||| |||||||| Sbjct 1022390 CACAACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGTGTCAACCCTAAGAAGATTGT 1022449 Query 56663 AGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACAAAAA 56722 || || |||||||||||||| ||||| |||||||| ||| ||| ||| | || Sbjct 1022450 GGTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGTCCACAATT---ACGAAGATAA 1022506 Query 56723 CAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGACGGAGTCGT 56782 ||||| || | |||| || | ||||||||||||||||| ||| ||||||| || || Sbjct 1022507 TAATCCCTTCACAGGCAACGCGACAGGACCTGTCAAAGGTACTTGGCAAGACGGTGTAGT 1022566 Query 56783 TGATTTTAGAGAAATTTTCAACTCTTTTGTGACTAACAAACCGATGGATCGTTACGATGC 56842 ||||| |||||||| || | | | ||| | | | ||| ||| Sbjct 1022567 TGATTACAGAGAAATAGCAAATGAAATCGCTATGGGGAAATGGGAGTTCCATTATGATAA 1022626 Query 56843 TATAGCAAAAGCGTCATACGTTTTTAATAATTCGACAGGTGATCTCATCACTTACGACAG 56902 | || |||| | ||||| || | ||||| ||||| | || || ||||| | Sbjct 1022627 CGTTGCCGAAGCTCCTTACGTGTTCAGGCCATCGACTGGTGACTTAATAACGTACGATAA 1022686 Query 56903 TCCCCAGTCGGTTCTGGATAAAGCAAAGTATGTGTTAGACTACAACTTGGGTGGGTTGTT 56962 ||| | ||| | | || |||| ||||||||| | || | || |||| || || || Sbjct 1022687 TCCTCGATCGACTATTGAGAAAGGCAAGTATGTGAGAAACAATAAGCTGGGCGGTTTATT 1022746 Query 56963 TGCGTGGGAAATCGATGCAGATAACGGATTACTTTTAAACGCAATGAATAGTGGTCTTGG 57022 |||||||| || |||||||| || || ||| |||||||| ||||| | ||||| || Sbjct 1022747 CGCGTGGGAGATTGATGCAGACAATGGTGAACTATTAAACGCCATGAACATGGGTCTCGG 1022806 >seq5346 Length=541963 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| |||||||| ||||| | || || | ||||| || | Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| ||||| || |||||||| || ||||| || ||| Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || || ||| | ||||| | || | | ||||||||| Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| |||| | ||||| || |||||||| |||||||| Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| |||||||| ||||| | || || | ||||| || | Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| ||||| || |||||||| || ||||| || ||| Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || || ||| | ||||| | || | | ||||||||| Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| |||| | ||||| || |||||||| |||||||| Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 360781 >seq2310 Length=6428792 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||| ||||| | || || ||||||| || || | Sbjct 5746188 ATGCAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746247 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 5746248 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746307 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || |||||| || || ||||||| | | || ||||||||| Sbjct 5746308 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAAT 5746367 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||| || || | || || |||||| | || |||| || Sbjct 5746368 ATCCAAAAAGAGTCCACCCTCCACTTGGTGTTACGTCTGCGAGGTGG 5746414 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || ||||| ||||| | || ||| |||| || || || Sbjct 5745731 AATGCAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTC 5745790 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 5745791 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCA 5745850 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | || |||||| || || ||||||| | | || |||||| || Sbjct 5745851 GCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACAA 5745910 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || ||||| ||| | || || || || | ||| |||| || Sbjct 5745911 CATTCAGAAGGAATCCACACTCCACTTGGTACTACGTTTGCGAGGTGG 5745958 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | |||||| | |||||||| | Sbjct 5745960 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCT 5746019 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 5746020 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746079 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | || |||||| || || || ||| ||| | || || || || || Sbjct 5746080 CAGAGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACAC-TCTCTGACTACAA 5746138 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| |||||||| || || Sbjct 5746139 CATCCAAAAAGAGTCCAC 5746156 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | |||||| | |||||||| | Sbjct 5746644 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCT 5746703 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || |||||||| || || || || Sbjct 5746704 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAG 5746763 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | || |||||| || || || ||| ||| | || || || || || Sbjct 5746764 CAGAGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACAC-TCTCTGACTACAA 5746822 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| |||||||| || || Sbjct 5746823 CATCCAAAAAGAGTCCAC 5746840 >seq1358 Length=322254 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| ||||| || || ||||| || ||||| || ||| Sbjct 28 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAGGAAGGAATCCCTCCAGACCAA 87 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||||| || | | || || ||| | ||||| | || | | | | | |||||||| Sbjct 88 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGA-CTTTATCTGATTATAA 146 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| |||| | ||||| || |||||||| |||||||| Sbjct 147 TATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429906803583660