Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3133 219 4e-52 seq1114 102 7e-17 seq5346 95.1 1e-14 seq2115 95.1 1e-14 seq2310 86.0 5e-12 >seq3133 Length=7630298 Score = 219 bits (242), Expect = 4e-52 Identities = 583/884 (66%), Gaps = 15/884 (2%) Strand=Plus/Plus Query 32171 GTCGCTGCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTG 32230 |||| ||||| || || |||||||| || ||| | || ||||| | || || Sbjct 1021614 GTCGGAGCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTA 1021673 Query 32231 CCGTTGCCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGA 32290 || | || ||| || | ||||| |||||||| |||||||| |||||||| ||||| || Sbjct 1021674 CCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGC 1021733 Query 32291 CTAAACGATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCA 32348 | ||||| | | || || | || |||||||| | || || ||||| || |||| Sbjct 1021734 ATCAACGA--CAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCA 1021791 Query 32349 AAGGCCGCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGC 32408 ||||||| ||| || || ||| | |||||||| || ||||| || | || || || | Sbjct 1021792 GCGGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCAC 1021851 Query 32409 AGAAGGGCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGG 32468 | ||||| | ||| | ||||| || || ||||||||||||||||| || ||||| | Sbjct 1021852 AAAAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTC 1021911 Query 32469 CCAAGTTGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGG 32528 || || | ||| || | ||||| |||| || || || || ||||| | | | Sbjct 1021912 TTAAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAG 1021971 Query 32529 ATCCCTTTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAA 32587 ||||||| | | || | ||| ||| || || | | || || ||||| || ||| Sbjct 1021972 ATCCCTTCT-TCTTCTTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAA 1022030 Query 32588 GAGTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGC 32647 || || | ||| ||||| ||||| ||||| || || || |||||||| ||||| ||| Sbjct 1022031 GATTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGC 1022090 Query 32648 GGCAAAGGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATT 32707 || || || || || || | || || | || |||| | ||| || Sbjct 1022091 GGTAAGGGAGCTAATCCAGACCTTGGCAGTCCCAAG---GACGGAGATGTTTACGTTGAA 1022147 Query 32708 TTGTTACAAGAATTGCGTTCTATGCTGGACGACCTTCAATTGCAAACGGGCAAAACGTAC 32767 || | | ||||||||| ||| || |||||||| | || || || | ||| Sbjct 1022148 TTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCCGAAGAGACCGGTAAGAAATAC 1022207 Query 32768 GAGTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCC 32827 ||| |||| || |||||||| || || || ||| || || | || | Sbjct 1022208 GAGCTGACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCGATTACAGTGAG 1022267 Query 32828 GCGCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCT 32887 || || |||||| | || | || || || |||||||||||||| ||||| || |||||| Sbjct 1022268 GCTCAGAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAGGCGCCTGGTCT 1022327 Query 32888 AAC---ACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAA 32944 ||| ||| | || ||||||| | | |||||||| |||||| || | ||| Sbjct 1022328 AACGATACC---CTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGAACCCTAAGGAA 1022384 Query 32945 TTGTACACCACAGATCACGCTGTTAAATTGTTAACAAGTCAAGGTGTAGCTTCTTACAAA 33004 ||||| || || | ||| |||| || ||||||||| || | || Sbjct 1022385 ACTTACACAACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGTGTCAACCCTAAGAAG 1022444 Query 33005 ATCATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 || | || || | || |||||||| ||||| ||||| || || Sbjct 1022445 ATTGTGGTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGT 1022488 >seq1114 Length=8361563 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 115277 AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG 115336 || |||| |||||| || || || ||||| || ||||| |||||||| || | || Sbjct 2710286 AGTTTAACAATGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTT 2710345 Query 115337 GAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCC 115396 || || |||||| | | | | |||||| |||||| || ||||| ||| | || Sbjct 2710346 GAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCA 2710405 Query 115397 GTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCC 115456 |||||||||||| | || | || |||||||| || ||||||| || || || Sbjct 2710406 CCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCC 2710465 Query 115457 GATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || || ||||| || || || || || | || |||||||||| | |||||||| || Sbjct 2710466 GACTACAACATCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGGTAA 2710524 >seq5346 Length=541963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || ||||| || || || | ||| || | Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | |||||| || || ||||||||||| |||| || || Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || |||||||| | ||| || |||||||| ||||| | | || | |||||||||| Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 ||||||||||| ||| ||||| |||| || ||||| ||||||| || Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 231466 >seq2115 Length=629047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || ||||| || || || | ||| || | Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | |||||| || || ||||||||||| |||| || || Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || |||||||| | ||| || |||||||| ||||| | | || | |||||||||| Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 ||||||||||| ||| ||||| |||| || ||||| ||||||| || Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 360778 >seq2310 Length=6428792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | |||||||| ||||| || ||||| ||| || | Sbjct 5746188 ATGCAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746247 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | || ||| || || || || ||||| ||||| || ||| Sbjct 5746248 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746307 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | || |||||||| ||||||||| || | |||||||||| Sbjct 5746308 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAAT 5746367 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||| || | || ||||||| | ||||||| || Sbjct 5746368 ATCCAAAAAGAGTCCACCCTCCACTTGGTGTTACGTCTGCGAGGTGG 5746414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425315115420640