Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3133 194 2e-44 seq1114 179 3e-40 seq2310 111 1e-19 >seq3133 Length=7630298 Score = 194 bits (214), Expect = 2e-44 Identities = 352/513 (69%), Gaps = 18/513 (4%) Strand=Plus/Plus Query 23637 GTCGCCGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTG 23696 |||| || ||||| || || ||||| || || || ||| |||| || || || || Sbjct 1021614 GTCGGAGCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTA 1021673 Query 23697 CCCGTGCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGA 23756 || | |||||| || | ||| | | ||||| || | || || ||||| ||||| || Sbjct 1021674 CCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGC 1021733 Query 23757 ATTAACGACGCTCTCAA---AACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGC 23813 || |||||| | | || || || ||||||||| | || || || || || ||| Sbjct 1021734 ATCAACGACAGTTTGAAGGAAATCGAA---GGCAGTTTCCAAGCTCTTCAACGATCATGC 1021790 Query 23814 GCGGGCCGCGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCG 23873 ||||||| || ||||| || || || |||||||||||||| |||||||||||||| Sbjct 1021791 AGCGGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCA 1021850 Query 23874 CAGAAGGGAGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCA 23933 || ||||| | || | ||||| ||||| || || |||||||||||| ||||| | Sbjct 1021851 CAAAAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCT 1021910 Query 23934 ACGAAACTGGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCT 23993 |||| || || || | ||| | |||||||| |||||||||||||| || | Sbjct 1021911 CTTAAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCA 1021970 Query 23994 GATCCGT-----TTTATCACATGC-ACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCT 24047 ||||| | || ||||| | | ||| || | ||| || | || ||| Sbjct 1021971 GATCCCTTCTTCTTCTTCACAGACAAAGAGAAGAGAGATCGC------TTCGTGGATTCT 1022024 Query 24048 GTCGAAGAGTTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTC 24107 || |||| || | || ||||| ||||| ||||| || || || |||||||| ||| Sbjct 1022025 GTGAAAGATTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTC 1022084 Query 24108 CCCGGCGGCAAAGGGGCAAATCCCAACGTTGGC 24140 || ||||| || || || ||||| || ||||| Sbjct 1022085 CCTGGCGGTAAGGGAGCTAATCCAGACCTTGGC 1022117 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 51800 TGGCCTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTG-- 51857 ||||||| ||||||||||| ||||| ||||| || || || |||||| |||||||| Sbjct 7349248 TGGCCTCAATGTTGCCGAGGTCGCCAACGTGGCGTATGGTGGCGTTGGGAGCGCCGTGCT 7349307 Query 51858 -GTGTTTGCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGC 51916 || ||| ||| |||||||| | || || || ||||| ||||| || |||| | Sbjct 7349308 CCTGCTTG---TTGGGGTTAAAGTGGGCCCCAGCAGATGTGCAGCCGTTTGTGTTGTCAC 7349364 Query 51917 CGAACTCGTGCACGTGAAAGCCGTG 51941 | ||||| |||||||| || ||||| Sbjct 7349365 CAAACTCATGCACGTGGAAACCGTG 7349389 >seq1114 Length=8361563 Score = 179 bits (198), Expect = 3e-40 Identities = 482/733 (66%), Gaps = 7/733 (1%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || ||||| || || || | ||| ||||| | || | ||| || ||||| Sbjct 3013988 TGGTTAACAACCTGGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAAT 3014047 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| ||||| ||||| || | |||||| || || | ||| || ||||| || Sbjct 3014048 GGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGATGCTGTAGGCATTGGAGCT 3014107 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | || | ||| ||||| || || || || || | ||| |||| | ||| ||| Sbjct 3014108 AATAAAAGTGAGTTGCGAAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCC 3014167 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 ||||| ||| || | ||||||||||| || || || ||||| | ||| | || Sbjct 3014168 CATAGATCAGTTGGAGTTTTATCCCACATGTCATATTGTAAGATGCCTTGGCTTGTTGGA 3014227 Query 145295 CTGCCTTGAAAGGAACTGT-AACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGCCTCCA 145352 || |||| | | | ||| | |||| ||| ||||| || || || ||||| ||||| | Sbjct 3014228 CTTCCTTCATATGTACTATAAACT--CCCTCTTTTTGCGCCAGTTCACAACTGGCCTCTA 3014285 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 || ||| |||| || || ||| ||||| ||| || || ||||| || || | Sbjct 3014286 ATGCTCCGTAATATATAGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTT 3014345 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 | || || ||||||| |||||||| | ||| || | || || | ||| | || || | Sbjct 3014346 CATATGGAATGCGCAATAGTACAAATGTATCAGCTAAACCTTGCACTCCAATACCTATAG 3014405 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532 | | ||| |||||| || | || | || || |||| || |||| Sbjct 3014406 GTCTGTGTCGCATGTTAGAGTTCTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAA 3014465 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 ||||||| | |||| | | |||||||| | ||||||| ||||| | Sbjct 3014466 TTTTATTAAGGTTTTGTGTGATCGTCTTTGTAACTTCTTTCAACTTTGTAAAGTTGTATG 3014525 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 || ||| | ||| | || || | || || || || |||||||||||||| Sbjct 3014526 TTTTATCTTCATTG---ACAAACCTGTTTAATGCAATTGAAGCTAAATTACAAACTGCAA 3014582 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 || || || |||| | || || || | ||||||||| || ||||| || || | Sbjct 3014583 CTTCATCTGCTGAAGTGTACTCAACAATTTCTGTGCACAAATTACTGCATTTAATTGTGC 3014642 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 | ||||||| ||||||||||| ||||| || | || ||||| |||||||| ||| || Sbjct 3014643 CAAGATTTTTTTGATTACTTTTTCTGTTACATGAATCTTTGTACAGCATGTATGGTGTGC 3014702 Query 145773 CAGTCTCCACCTG 145785 | || ||||| || Sbjct 3014703 CTGTTTCCACTTG 3014715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| || || | ||||| ||||| || |||||||| ||| || || || || Sbjct 2710507 CAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATC 2710448 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || | ||| ||||| ||| |||| || | ||||| || || || || || |||||||| Sbjct 2710447 TTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTC 2710388 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| || | | || | ||| || | || || | || | || | ||| Sbjct 2710387 TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 2710328 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| || || ||||||||||| |||||||| Sbjct 2710327 TTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 >seq2310 Length=6428792 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||| || || || || | || || ||||| ||||||||||||||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||||||| ||||| ||| |||| | ||| |||||||| || ||| Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || |||| | | | ||| | || || | || || | Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTT-GGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCAC 5745780 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || |||| || || || || |||||||| Sbjct 5745779 CTCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | ||| ||||| ||||| |||||||| || Sbjct 5746186 CCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAG 5746127 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||||||| ||||| ||| |||| || | ||||||||| || ||| Sbjct 5746126 AGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 5746067 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || | | |||| Sbjct 5746066 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACT 5746007 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || || | || || || || |||||||| Sbjct 5746006 TCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || || ||||| ||||||||||||||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||||||| ||||| ||| |||| | ||| |||||||| |||||| Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| |||| | | | ||| | || || | || || | Sbjct 5746522 ATACCTTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCAC 5746464 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || || || |||||||| Sbjct 5746463 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | ||| ||||| ||||| |||||||| || Sbjct 5746870 CCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAG 5746811 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||||||| ||||| ||| |||| || | ||||||||| || ||| Sbjct 5746810 AGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 5746751 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | ||| | || || | | |||| Sbjct 5746750 ATGCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACT 5746691 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || || | || || || || |||||||| Sbjct 5746690 TCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || || ||||| || |||||||| || | Sbjct 5745274 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5745215 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||||||||| || |||| || | ||||||||| || ||| Sbjct 5745214 AATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5745155 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||| |||| | || | || || | || || | Sbjct 5745154 ATGCCTTCCTTGTCTTGGATTTT-TGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCAC 5745096 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || | || || || || |||||||| Sbjct 5745095 TTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | || ||||||||||| |||||||| || Sbjct 5747098 CCACCACGGAGGCGAAGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAG 5747039 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | ||| ||||| ||| |||| | ||| |||||||| || ||| Sbjct 5747038 AGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5746979 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || |||| | | | ||| | || |||| || || | Sbjct 5746978 ATACCTTCCTTGTCTTGGATCTT-GGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCAC 5746920 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || |||| || || ||||| |||||||| Sbjct 5746919 TTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | |||||| ||||| || |||| ||||| |||||||| || ||||| || Sbjct 5745503 GCCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGA 5745444 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || |||||||| || || |||| | ||| ||||| || || || Sbjct 5745443 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 5745384 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| ||||| ||| ||| |||| | | || | || || | || || | Sbjct 5745383 AATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAA 5745325 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || | || || || ||||||||||| Sbjct 5745324 CCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471979924308480