Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008000.1 Length=14531 Score E Sequences producing significant alignments: (Bits) Value seq4711 80.6 2e-11 seq3105 80.6 2e-11 seq5049 78.8 9e-11 seq3907 78.8 9e-11 seq3133 78.8 9e-11 >seq4711 Length=1163533 Score = 80.6 bits (88), Expect = 2e-11 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 10506 TACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGC 10565 || ||||||||| |||||||||||| || |||||| ||||| |||||||| ||||| Sbjct 778473 TAAAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACCACTTTCTTTTATATATATAGA 778532 Query 10566 TAGATAGATATTTAGATTA 10584 || ||| |||| ||||||| Sbjct 778533 TATATATATATATAGATTA 778551 >seq3105 Length=7089461 Score = 80.6 bits (88), Expect = 2e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 10506 TACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGC 10565 || ||||||||| ||||||||||||| ||| |||||| |||||| |||||||| |||| Sbjct 4529587 TAAAGCCGTTCTTAAGTTATAAATAGTGTCACTAACACGACTTTCTTTTATATATATATA 4529646 Query 10566 TAGATAGATATTTAGAT 10582 || ||| |||| || || Sbjct 4529647 TATATATATATATATAT 4529663 Score = 80.6 bits (88), Expect = 2e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 10506 TACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGC 10565 || ||||||||| |||||||||||| || |||||| |||||| |||||||| ||||| Sbjct 4678253 TAAAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACGACTTTCTTTTATATATATAGA 4678194 Query 10566 TAGATAGAT 10574 ||||||||| Sbjct 4678193 TAGATAGAT 4678185 >seq5049 Length=7158630 Score = 78.8 bits (86), Expect = 9e-11 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 10506 TACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGC 10565 || ||||||||| |||||||||||| || |||||| |||||| |||||||| ||||| Sbjct 2205301 TAAAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACGACTTTCTTTTATATATATAGA 2205360 Query 10566 TAGATAGATATTT 10578 || ||||||| || Sbjct 2205361 TATATAGATAATT 2205373 >seq3907 Length=4173383 Score = 78.8 bits (86), Expect = 9e-11 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 10506 TACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGC 10565 || ||||||||| |||||||||||| || |||||| |||||| |||||||| ||||| Sbjct 2237492 TAAAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACGACTTTCTTTTATATATATAGA 2237433 Query 10566 TAGATA-GATA-TTTAGAT-TATG 10586 |||||| || | ||||||| |||| Sbjct 2237432 TAGATATGAAAGTTTAGATGTATG 2237409 >seq3133 Length=7630298 Score = 78.8 bits (86), Expect = 9e-11 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 10506 TACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGC 10565 |||||||||||| |||||||||||| || |||||| |||||| || ||||| |||| Sbjct 7012833 TACAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACGACTTTCTTATATATATATATA 7012892 Query 10566 TAGATAGATATTTAGATTATG 10586 || ||| |||| |||||| || Sbjct 7012893 TATATATATATATAGATTTTG 7012913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46377811858984