Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3133 255 5e-63 seq3105 113 4e-20 seq2310 96.9 3e-15 seq1114 82.4 6e-11 >seq3133 Length=7630298 Score = 255 bits (282), Expect = 5e-63 Identities = 785/1194 (66%), Gaps = 35/1194 (3%) Strand=Plus/Minus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || |||||||| || | || || |||||||| || || || ||||| || || ||||| Sbjct 1022797 ATGTTCATGGCGTTTAATAGTTCACCATTGTCTGCATCAATCTCCCACGCGAATAAACCG 1022738 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 || | ||| || | | |||||| ||||| | ||| || | | |||| || Sbjct 1022737 CCCAGCTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGAGGATTATCGTAC 1022678 Query 95949 GAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-AA 96007 | ||||| || || | | | || ||||| | |||| || ||||| ||| || Sbjct 1022677 GTTATTAAGTCACCAGTCGATGGCCTGAACACGTAAGGAGCTTCGGCAACGTTATCATAA 1022618 Query 96008 TTTAACAATATATT-----TGTTTATTTCGTTTTTGATTTGGCGATAATCAACAACGCCA 96062 | ||| || | ||||| ||| |||| | |||||||| || || Sbjct 1022617 TGGAACTCCCATTTCCCCATAGCGATTTCATTTGCTATTTCTCTGTAATCAACTACACCG 1022558 Query 96063 TCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAG-TTATCGTTTTC 96121 |||| |||||| || || || || | | || || || | |||| | ||| Sbjct 1022557 TCTTGCCAAGTACCTTTGACAGGTCCTGT-CGCGTTGCCTGTGAAGGGATTATTATCTTC 1022499 Query 96122 GTAATTTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCG 96181 |||||| || || ||||||||||| |||||||| || || ||||| | ||| || Sbjct 1022498 GTAATTGTGGACACCGGTCCAGCCGCGTCCGTACATAGCTACACCCACCACAATCTTCTT 1022439 Query 96182 CGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCTC 96238 |||| || |||||| | ||||| ||| || || ||| || |||| || Sbjct 1022438 AGGGTTGACACCTTGA---GCAAGCAAATATTTCACACCAAAGTCAGTTGTGTAAGTTTC 1022382 Query 96239 GTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACCA 96298 || ||||||||| || ||||| || | ||| || | || | | ||| ||||| Sbjct 1022381 CTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCGAGGGTATCGTTAGACCA 1022322 Query 96299 CGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTC 96358 |||||||| || ||||| ||||| || || || | ||| | | |||| || || | Sbjct 1022321 GGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCCATGTACTTCTGAGCCTCACT 1022262 Query 96359 GTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGT 96418 ||| | || || ||| || || || ||||| || ||| |||| |||||| | Sbjct 1022261 GTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATAGCAGAGGTCAGCTCGTATTT 1022202 Query 96419 TTTGCCCGTTTGCAGTTGCAAC-TCGTCTAACATCACGCGCAATTCCTTTAATAGAATGT 96477 || || || | | | || |||| ||||| | ||||||||||| | || | Sbjct 1022201 CTTACCGGTCT-CTTCGGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAA----T 1022147 Query 96478 TGTACGTGTCAGCGTCGCGCTCTTTGT---TGCCGAGCGTCGGG-TTGGCGCCTTTACCG 96533 | |||| | | || | || ||| |||| || ||| || || || || |||||| Sbjct 1022146 TCAACGTA--AACATCTCCGTCCTTGGGACTGCCAAG-GTCTGGATTAGCTCCCTTACCG 1022090 Query 96534 CCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCT 96593 || || |||||||| ||||| || || |||||||| || ||||| ||| | || ||| Sbjct 1022089 CCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACTTCCATGTCTGAAGGAAATCT 1022030 Query 96594 CTGACGGAGTCTACAAACACGCGCCGTTTT-TCCGCGTC-GTGCATGTAATAGAACGGGT 96651 | || || || || || || | | || || ||| ||| | | | |||| || | Sbjct 1022029 TTCACAGAATCCACGAAG-CGATCTCTCTTCTCTTTGTCTGTGAA-GAAGAAGAAGGGAT 1021972 Query 96652 CGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGG 96711 | | || |||||||| ||||| || || || |||||||||| || | || |||| Sbjct 1021971 CTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGTCAGGCCTGGCTTGTTTAA 1021912 Query 96712 CCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTT 96771 | ||||| ||||||||||||||||||||| ||||| ||||| | ||| | ||||||| Sbjct 1021911 GAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCCAGGAAGAAAGACCCTTTT 1021852 Query 96772 GCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCT 96831 | || || || | || ||||| || |||||||| | |||||| |||||| ||||| Sbjct 1021851 GTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTTTGAAATCTTCGCGGCCGC 1021792 Query 96832 GGCAAGAGCGTTGCAGCGCTTCAAAACTACC--GGGTATGGTTTTAAGGGCATCGTTAAG 96889 ||| || ||||| || |||| ||||| || | | | || || | ||||| | Sbjct 1021791 TGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTG--TCGTTGAT 1021734 Query 96890 GCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGG 96949 ||| ||||| || ||||| || ||||| |||||||| | ||| | || || || | || Sbjct 1021733 GCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATGAGTCAGATTAGGAATTGG 1021674 Query 96950 CACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 || || || || || || | || || |||||||| || || ||||| Sbjct 1021673 TACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTCAACGAAGTACGC 1021620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 19398 CACGGTTTTCATGTGCACGAGTTTGGTGATACCAGCAACGGGTGCACGTCAGCAGGCGAG 19457 |||||||| || ||||| ||||||||||| | || ||||| ||||| || || || | Sbjct 7349389 CACGGTTTCCACGTGCATGAGTTTGGTGACAACACAAACGGCTGCACATCTGCTGGGGCC 7349330 Query 19458 CATTTTAACCCCACGCATCAACAGCATGGTGCCCCCGACGCCGCAGAGCGGCACGTTGGT 19517 || |||||||||| | || |||| || || ||| ||||| | || |||||||| Sbjct 7349329 CACTTTAACCCCAACAAGCAGGAGCACGGCGCTCCCAACGCCACCATACGCCACGTTGGC 7349270 Query 19518 GACCTGGGCAAC 19529 ||||| |||||| Sbjct 7349269 GACCTCGGCAAC 7349258 >seq3105 Length=7089461 Score = 113 bits (124), Expect = 4e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 29296 AACGACGCCGACTCGCCGTACCGCGTGCTGCTCATGTCCATCAAATGCGGCGGCGTGGGG 29355 ||||| |||| |||||| |||||| |||| |||| | | |||||||||||| Sbjct 124524 AACGAGGCCGGGTCGCCGGTGCGCGTGATGCTGCTGTCGCTGACGGCGGGCGGCGTGGGG 124465 Query 29356 CTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGGAACCCGCAGGTG 29415 ||||| || |||| || |||||| | || |||| |||||||||||||||||| || Sbjct 124464 CTGAACCTGTGCGGCGCCAGCCACCTGCTGCTGCTGGACCCGCACTGGAACCCGCAGCTG 124405 Query 29416 GAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAG-CGCAAACGCGCGCACGTGTA 29474 ||| ||||||||||| |||| | |||| |||| ||| ||| | || ||||||||| Sbjct 124404 GAGCAGCAGGCGCAGGACCGCGTGTACCGCGTGGGGCAGACGC-GCCACGTGCACGTGTA 124346 Query 29475 C 29475 | Sbjct 124345 C 124345 >seq2310 Length=6428792 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || ||||| ||||| || ||||||||||| | || || |||||| Sbjct 5744803 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGT----GCGTCC 5744748 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| |||||||| ||| | || | | ||| ||||| || | ||||||||| Sbjct 5744747 ATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTT 5744688 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 ||| ||| | ||| || | | | ||||| |||||| |||| |||||| Sbjct 5744687 GTCTTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGAT 5744628 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 ||| || || |||| || || |||||||||||||| ||||| Sbjct 5744627 GGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTTGTA 5744586 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || ||||| ||||| || ||||||||||| | || ||| |||| Sbjct 5745031 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCT 5744972 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||| ||| | || | | ||| ||||| || | ||| || ||||| Sbjct 5744971 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5744912 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || || | | | ||||| ||| ||| ||| | ||||||| Sbjct 5744911 TGGATTTTTGCT--TTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGG 5744854 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || |||||||| |||||||| Sbjct 5744853 TTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || ||||| ||||| || ||||||||||| | || ||| |||| Sbjct 5745259 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCT 5745200 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || | | ||| ||||| || | ||| || ||||| Sbjct 5745199 TCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5745140 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || || | | | ||||| ||| ||| ||| | ||||||| Sbjct 5745139 TGGATTTTTGCT--TTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGG 5745082 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || |||||||| |||||||| Sbjct 5745081 TTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || |||||||||||||| ||||||||||| | | || | | ||| Sbjct 5747083 AGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCC 5747024 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| |||||||| || | || || || || ||||| || | || || ||||| Sbjct 5747023 TCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746964 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | |||||| ||| ||| ||| | ||||||| Sbjct 5746963 TGGATCTTGGCT--TTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGG 5746906 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || | || || || || |||||||| Sbjct 5746905 TCTTTCCCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | || | | ||| Sbjct 5747311 AGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCC 5747252 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| |||||||| || | ||||| || || ||||| || | || || ||||| Sbjct 5747251 TCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5747192 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||||| |||||| |||| |||||||| Sbjct 5747191 TGGATTTTGGCT--TTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGG 5747134 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||| || ||||| || |||||||| Sbjct 5747133 TCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 >seq1114 Length=8361563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| ||||||| |||| || || || || ||||| || ||||||||||||| | Sbjct 2710521 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGAC 2710462 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || ||||| |||||||| || | || | | || || || || Sbjct 2710461 AATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 2710402 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| ||||| | || || | | | |||||| || || Sbjct 2710401 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 2710342 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | || |||||||| || || || ||||| || || ||||||||| Sbjct 2710341 TCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405060490980280