Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3128 167 2e-36 seq2 138 8e-28 seq2310 129 4e-25 seq1114 127 1e-24 seq5346 114 9e-21 seq2115 114 9e-21 seq1358 95.1 8e-15 >seq3128 Length=5114887 Score = 167 bits (184), Expect = 2e-36 Identities = 130/155 (84%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| | | ||||| || || |||||||||||||| || ||||||||||| |||||| Sbjct 404376 ATGGGGTCGGTCAACGTTAACCGGAATGTGGCGGACGCATTTTACCGCTACAAGATGCCG 404317 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| ||||||||| Sbjct 404316 CGCATCTGCGCGAAGGTGGAGGGCAAGGGCAACGGCATCAAAACTGTCATCGTCAACATG 404257 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || ||||| || ||||||||||| | || ||||| Sbjct 404256 CCCGAAGTGGCCAAGGCGCTCGGCAGACCCGCCAC 404222 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || ||||||||||| |||||||| | ||| ||||| || |||||||| ||||| || ||| Sbjct 403905 TTCATTCGCAAGTTCGTGCTGTGCCCGGAGTGCGACAATCCGGAGACGGAGCTGATCGTG 403846 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || || |||| |||| |||||| ||||| ||||| |||||||| ||||| ||| || Sbjct 403845 TCGACGAAGAAGAACAGCATCTCGCAGGGTTGCAAGGCGTGCGGCTACCACGGCGCCCTC 403786 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || ||||| ||||| || |||||| ||||||| || || Sbjct 403785 GAGTTCAACCACAAGCTCAATACGTTCATATTGAAGAACCCGCC 403742 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || || || ||||||||||| || ||||| ||||| ||||| ||| ||| |||| Sbjct 404134 ACCCCACCAAGTACTTCGGGTGCGAGCTGGGCGCGCAGACCCAGTTCGATTTCAAGAACG 404075 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 |||||||||| || ||||| || |||||||||| || |||||| | || ||||| Sbjct 404074 AGCGCTTCATTGTCAACGGCAGTCACGACTCTGCCAAACTTCAGGACCTGCTGGACGG 404017 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 6987 AAGGCGCCGCTGGTGCTTTTTGAGGTGCTGGTGCGTCCGGCCGCGCTGGCGTGCGATGTG 7046 ||||||||||||||| | || |||||||||||||| ||| | |||||||| || ||| Sbjct 402829 AAGGCGCCGCTGGTGGTGTTCGAGGTGCTGGTGCGGCCGAACTCGCTGGCGGCGGACGTG 402770 Query 7047 CGCAAGTACCGCGCGCTGTTGCTGCGCTTTACGCAACATGACCCGCGCGCGCAACGCGCC 7106 ||| | || | ||| ||||||| | |||| || || ||||| || |||||| Sbjct 402769 AAGAAGCAGCGTCCTCTGCTGCTGCGTCTGACGCGCGGCGAGCCCCGCGCCCAGCGCGCC 402710 Query 7107 GTTCTCACTGCGCT 7120 || |||| |||||| Sbjct 402709 GTGCTCAATGCGCT 402696 >seq2 Length=41975 Score = 138 bits (152), Expect = 8e-28 Identities = 87/94 (93%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 18097 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 18038 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 |||||| ||||||||||||||||||||||||||| Sbjct 18037 TAATCCATTCATGCGCGTCACTAATTAGATGACG 18004 >seq2310 Length=6428792 Score = 129 bits (142), Expect = 4e-25 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| || |||||| ||||| || || ||| ||||| ||||| ||||||| Sbjct 5745734 CATT-CCACCTCGCAGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAAT 5745676 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | |||| | || || || ||||| |||||||| || || ||||| || || | Sbjct 5745675 CAGAGAGTGTACGTCCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTG 5745616 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||||| || || || || || ||||||| | |||||| | || Sbjct 5745615 GGGGGATACCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTT 5745556 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || || |||||||| || || || || |||||| Sbjct 5745555 CAACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCATG 5745503 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||| | |||||| || || || |||||||| |||||||| || || Sbjct 5745502 CCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAA 5745443 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || ||||| ||||| | ||| Sbjct 5745442 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 5745383 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| |||||| || ||||| | | || || |||||| Sbjct 5745382 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACC 5745323 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || ||||| || |||||||| ||||| || |||||||| Sbjct 5745322 TCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| ||||| ||| ||||| || || ||||| |||| Sbjct 5745048 TACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 5744989 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| || | ||||| |||||||| || | | || || || | || Sbjct 5744988 ACAATGTTCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 5744929 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| ||||| |||||| || ||||| | | || || ||| | Sbjct 5744928 GGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCA 5744869 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || ||||| || |||||||| || || || |||||||| Sbjct 5744868 CTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| ||||| ||| ||||| || || ||||| |||| Sbjct 5745276 TACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 5745217 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | || || |||||||| || | | || || || | || Sbjct 5745216 ACAATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 5745157 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| ||||| |||||| || ||||| | | || || ||| | Sbjct 5745156 GGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCA 5745097 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || ||||| || |||||||| || || || |||||||| Sbjct 5745096 CTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| ||||| ||| ||||| || || ||||| |||| Sbjct 5744820 TACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 5744761 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||||| |||||||| || | | || || || | || Sbjct 5744760 ACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 5744701 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| |||||||| ||| || ||| ||||| | | || || | || | Sbjct 5744700 GGATGCCCTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCA 5744641 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || || || || || || ||||||||||| ||||| || |||||||| || || Sbjct 5744640 CCTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTTGTA 5744586 >seq1114 Length=8361563 Score = 127 bits (140), Expect = 1e-24 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 38069 ACAAATACAAATCCAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTC 38128 ||| ||||||| | ||||||| |||| | | ||||||||| ||||| || || Sbjct 2710541 ACAGATACAAAGTAA--CATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTC 2710484 Query 38129 CTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATAT 38188 ||| || || ||||| || ||||| |||| | || || || ||||| ||||| || || Sbjct 2710483 CTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGAT 2710424 Query 38189 TAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTG 38248 | | ||| ||||| | || | ||| |||||||| |||||| || ||||| | Sbjct 2710423 CAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTC 2710364 Query 38249 GACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 || ||| || |||||| ||||| || || ||||||||||| | |||||| ||||| Sbjct 2710363 GATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAA 2710304 Query 38309 TATCTGCAT 38317 |||||||| Sbjct 2710303 GATCTGCAT 2710295 >seq5346 Length=541963 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| ||||| || | || |||||||| || || || || ||||||||||| ||||| Sbjct 231466 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 231407 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || ||| | | ||| || |||||||| || |||||||| || | ||||| || | Sbjct 231406 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 231347 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| |||||||| || || || || ||||||| | |||||| | ||| Sbjct 231346 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 231287 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || || || || || || || || || || || ||||||||| Sbjct 231286 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCATG 231236 >seq2115 Length=629047 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| ||||| || | || |||||||| || || || || ||||||||||| ||||| Sbjct 360778 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 360837 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || ||| | | ||| || |||||||| || |||||||| || | ||||| || | Sbjct 360838 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 360897 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| |||||||| || || || || ||||||| | |||||| | ||| Sbjct 360898 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 360957 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || || || || || || || || || || || ||||||||| Sbjct 360958 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCATG 361008 >seq1358 Length=322254 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| ||||| || | || |||||||| || || || || ||||||||||| |||||| Sbjct 197 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCA 138 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || ||| | | ||| || |||||||| || |||||||| || | ||||| || | Sbjct 137 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 78 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| || || || || || ||||||| | |||||| | ||| Sbjct 77 GGGATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 18 Query 38268 ACTTCTAATGTAATAGT 38284 ||||| || || || || Sbjct 17 ACTTCCAAAGTGATTGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334924454154332