Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq3133 275 7e-69 >seq3133 Length=7630298 Score = 275 bits (304), Expect = 7e-69 Identities = 591/875 (68%), Gaps = 25/875 (3%) Strand=Plus/Minus Query 51575 CCAGCCGCGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTC 51634 ||||||||| ||||||| || || || || || ||||||| | | || || || | Sbjct 1022480 CCAGCCGCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACACCTTGAGC 1022421 Query 51635 GAGAAGCGACGACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGC 51694 || | | ||| || |||| || ||||| |||| | |||||||| ||| || Sbjct 1022420 AAGCAAATATTTCACACCAAAGTCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGC 1022361 Query 51695 GAACAGTGTGGTCTGGTAGCCCAGATCGGT---GTTGGACCACGCACCCTTGAAATCGTA 51751 | | || | ||||| | || || ||| ||| ||||| || || ||||| ||||| Sbjct 1022360 GTAAAGCGGAGTCTGATGACCGAG---GGTATCGTTAGACCAGGCGCCTTTGAAGTCGTA 1022304 Query 51752 GTTCATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAAT 51811 |||| ||||| |||| |||| | | |||| ||| | ||| ||||| |||||||| Sbjct 1022303 ACTCATAAGGAAGATGTGGTCCATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAAT 1022244 Query 51812 TTTATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTA---CGAACGGTTCGTGGCGGC 51868 ||||| | || || || || || ||||| | ||| | || | || ||| Sbjct 1022243 CTTATCCCATCCAGCACTAATAGCAGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCGGA 1022184 Query 51869 GCTCAACTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATC 51928 | |||| | ||| || |||| || ||| | ||||| | |||| Sbjct 1022183 A---AGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTA------AACATC 1022133 Query 51929 GCGATC---GGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTC 51985 | || |||| ||| ||||| ||||| || || || ||||| || || ||||| || Sbjct 1022132 TCCGTCCTTGGGACTGCCAAGGTCTGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATC 1022073 Query 51986 GACGTCGACTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAA 52045 || || || ||||||||||||||||| ||| | || || || || || || ||||| Sbjct 1022072 GATATCTACACCGTCGAAGAACTTCCATGTCTGAAGGAAATCTTTCACAGAATCCACGAA 1022013 Query 52046 GGTTGCGCGTTTGCTCGC-GTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCG 52103 | | | || ||| ||| ||| || |||||||| ||||| | || ||||| || Sbjct 1022012 GCGATCTCTCTT-CTCTTTGTCTGTGAAG-AAGAAGAAGGGATCTGCAAGAGTCCAGCCA 1021955 Query 52104 CCGATCGAGGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCA 52163 ||||| || || || || || || ||| |||| |||| | ||||||||| ||| Sbjct 1021954 CCGATGGAAGGTAGGATTTTAAGGTCAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCA 1021895 Query 52164 AAGTTTCCCTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCC 52223 ||||| || ||||| || || ||||||| || | || || || || ||||| || || Sbjct 1021894 AAGTTGCCTTTGTATGGCTCATTCCAGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCA 1021835 Query 52224 GCCCAGGGATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAAC 52283 ||||| ||||||||||| | || || || || | ||| ||| || ||||| | Sbjct 1021834 GCCCACGGATCGTGAATTGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGA 1021775 Query 52284 GCTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATG 52343 |||| ||||||| ||||| |||| |||||||||||||| ||||||||||| || Sbjct 1021774 GCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATT 1021715 Query 52344 GGAATGAAGCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAG 52403 ||||| || ||||||| ||||| | ||| || || | || || |||| || || || Sbjct 1021714 GGAATAAAACCGTACAAAAGATGAGTCAGATTAGGAATTGGTACACGATCAACAGGGAAT 1021655 Query 52404 TTGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 || | ||| || |||||||| || ||||| || Sbjct 1021654 TTTCTTGGGTAGACACCCCATTCAACGAAGTACGC 1021620 Score = 147 bits (162), Expect = 2e-30 Identities = 165/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38432 CACCTATAAATACTGGCCCAAGAGCATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGG 38491 ||||| ||| ||||||| ||||| ||||| || | || |||| |||||||| Sbjct 2611687 CACCTTCAAAGACTGGCCGCGCTGCATGCGGCAGAAACCCGAGGAGCTGGCGGAGGCCGG 2611746 Query 38492 CTTCTACTATTCGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAA 38551 ||||| ||| | ||| ||| ||| | ||||| |||| |||| ||||||||| || Sbjct 2611747 CTTCTTCTACACCGGCCACGGGGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAA 2611806 Query 38552 GGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTCGACAGGTGCGC 38611 |||||||||| | |||| ||||||| |||||||||||||||||||||| | ||||| Sbjct 2611807 GGACTGGGAGAACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGC 2611866 Query 38612 TTACGTGCTCACC--GTCAAAGGCGCCGACTACGTTCAA 38648 |||||| ||| | || |||||| ||||||||| ||| Sbjct 2611867 TTACGT--TCAGCTGGTGAAAGGCCGCGACTACGTACAA 2611903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || |||||||| ||||| || |||| | ||||| ||||| || || |||| Sbjct 7349389 CACGGTTTCCACGTGCATGAGTTTGGTGACAACACAAACGGCTGCACATCTGCTGGGGCC 7349330 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 ||||| || |||| | ||| ||||| || |||||||| | | || ||||||||| Sbjct 7349329 CACTTTAACCCCAACAAGCAGGAGCACGGCGCTCCCAACGCCACCATACGCCACGTTGGC 7349270 Query 127664 GACCTGGGCAACGTGGAGGC 127683 ||||| |||||| | ||||| Sbjct 7349269 GACCTCGGCAACATTGAGGC 7349250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537565755937120