Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1673 230 3e-55 seq1390 217 2e-51 seq4120 181 1e-40 seq5074 134 2e-26 seq2386 134 2e-26 seq3554 132 5e-26 >seq1673 Length=160240 Score = 230 bits (254), Expect = 3e-55 Identities = 505/752 (67%), Gaps = 10/752 (1%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||||||||| || ||||||||||| || || | |||| | | ||||||||||| | Sbjct 44817 CAATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAAT 44876 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 |||| || |||| | || | || || |||| |||||| || || || | Sbjct 44877 AAGATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAAC 44936 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||| || | | ||| | | | || ||| | | |||| | | | || || || Sbjct 44937 GATATCCTTGA-TCT----TATCGCATTTATTG-ATAAGATAACTATTTAACAAACAAGC 44990 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| ||| ||| | |||||| ||||| || | ||||| || | ||||| || Sbjct 44991 AAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGG 45050 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || |||| |||||| | ||| || || |||||||| ||| ||| || || || Sbjct 45051 CATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCC 45110 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || |||||||| | || | |||||| | | ||| | ||||| Sbjct 45111 TTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCA 45170 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 ||| ||||||||||| || || || |||||| | |||| ||| | ||||| |||| || Sbjct 45171 TTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAG 45230 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | ||||||| ||| | || || ||||| || | | ||||||||||||||| Sbjct 45231 ATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGA 45290 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| ||| || || | | |||||||| || |||||| | || || || || Sbjct 45291 ATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGAC 45350 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||| | ||||| || || || ||||| ||| || |||||||| || || || ||||| Sbjct 45351 TTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAA 45410 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATC--ATCTTTAAGCTTATCCCAATCGGAT 93574 || | ||||| | ||| | | | ||||| | || ||| || |||||| || Sbjct 45411 TGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAG--AATTCCAATCATAT 45468 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | ||| ||||||||| |||||||| | |||||||| || ||| |||| ||||||| Sbjct 45469 AAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTAC 45528 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAA 93666 || | ||| || || ||||||| ||| || || Sbjct 45529 ATCTTCCAGATATCGTGATATTTAATAGGGAA 45560 >seq1390 Length=76047 Score = 217 bits (240), Expect = 2e-51 Identities = 505/755 (67%), Gaps = 16/755 (2%) Strand=Plus/Minus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||||||||| || ||||||||||| || || | |||| | | ||||||||||| | Sbjct 54969 CAATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAAT 54910 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 |||| ||||||| | || | || || |||| |||||| || || || | Sbjct 54909 AAGATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAAC 54850 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 || || | | ||| | | | || ||| | | |||| | | | || || || Sbjct 54849 AATATCCTTGA-TCT----TATCGCATTTATTG-ATAAGATAACTATTTAACAAACAAGC 54796 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| ||| ||| | |||||| ||||| || | ||||| || | ||||| || Sbjct 54795 AAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGG 54736 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || |||| |||||| | ||| || || |||||||| ||| ||| || || || Sbjct 54735 CATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCC 54676 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC---TGAT 93273 ||| || |||||||| | || | |||||| | | | || || | || Sbjct 54675 TTCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAG---ATTTTTTGTCTTTTAT 54619 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 |||||| || |||||||| || || || |||||| | |||| ||| | ||||| |||| Sbjct 54618 CCATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAG 54559 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | || | ||||||| ||| | || || ||||| || | | |||||||||||| Sbjct 54558 AAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTC 54499 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 |||||||| ||| || || | | |||||||| || |||||| | || || || Sbjct 54498 AGAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGT 54439 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||||| | ||||| || || || ||||| ||| || |||||||| || || || || Sbjct 54438 GACTTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAA 54379 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATC--ATCTTTAAGCTTATCCCAATCG 93571 ||| || | ||||| | ||| | | | ||||| | || ||| | |||||| Sbjct 54378 AAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAG--AGTTCCAATCA 54321 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 ||| ||| ||||||||| |||||||| | |||||||| || ||| |||| |||| Sbjct 54320 TATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTG 54261 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAA 93666 ||||| | ||| || || ||||||| ||| || || Sbjct 54260 TACATCTTCCAGATATCGTGATATTTAATAGGGAA 54226 >seq4120 Length=16292344 Score = 181 bits (200), Expect = 1e-40 Identities = 173/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || | || || ||||| ||||| || ||||||||||| ||||||||| Sbjct 7436411 ATGTAAGTATCAATCAGCAAGGAGTACATCTCAGAGTGTACATTCTCCATAGCAATTTGG 7436470 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || || | || ||||| || || |||||||| ||||||| |||||| ||| Sbjct 7436471 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACTAGA 7436530 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| ||||||||||| || || |||||||| ||||| | ||| || ||||| || Sbjct 7436531 TTCTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAAAACATGTTTAATAAAGTGC 7436590 Query 93542 TTCTCATCAT-CTTTAAGCTTATCCCAATCGGATAGATC 93579 ||||| || |||||| ||| |||||||| |||| ||| Sbjct 7436591 CTCTCACAATCCTTTAAACTT-TCCCAATCTGATAAATC 7436628 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 93125 GATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAAT 93184 || |||| |||||||||||| || | ||| || | | || || ||||| | ||| ||| Sbjct 7436018 GAAATCAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCACGCTTCTTCAACCAGAAT 7436077 Query 93185 ATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGT 93244 ||||| ||||| || |||||||| || || || ||||| || ||||| || || || | | Sbjct 7436078 ATTGACGCAAAGCTTCCAGAAAAGAAGATGCCCTCCACAGCAGCAAAGGCAACTATCCTT 7436137 Query 93245 TCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTA 93304 || |||| ||||| | || ||| |||||||| | ||||| || || || ||||| Sbjct 7436138 TCACCAAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTCTGCCTTCTTCTTT 7436197 Query 93305 ATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | ||| |||| ||||| | ||| || || | | |||||| Sbjct 7436198 ACACAGGGTAAAGTTTCAACAGCATTGAACAAGAAATCTC 7436237 >seq5074 Length=6409755 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 496560 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 496619 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 496620 GTGGGTTCGAACCCCACACCTGACAGAT 496647 Score = 132 bits (146), Expect = 5e-26 Identities = 84/90 (93%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 930985 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 930926 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||||||||||||||||||||||| || Sbjct 930925 GTGGGTTCGAACCCCACACCTGACAAAATA 930896 Score = 131 bits (144), Expect = 2e-25 Identities = 89/98 (91%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 501560 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTATGGGAGC 501619 Query 126323 GTGGGTTCGAACCCCACACCTGAC--AAATTATTATTG 126358 |||||||||||||||||||||||| || ||||| ||| Sbjct 501620 GTGGGTTCGAACCCCACACCTGACAGAATTTATTTTTG 501657 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 932946 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 933005 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||||| Sbjct 933006 CGTGGGTTCGAACCCCACACCTGACA 933031 >seq2386 Length=7418803 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 364100 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 364159 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 364160 GTGGGTTCGAACCCCACACCTGACAGAT 364187 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 374627 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 374568 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 374567 GTGGGTTCGAACCCCACACCTGACAGAT 374540 >seq3554 Length=4412 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 2236 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCATTTGGGAGC 2177 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 2176 GTGGGTTCGAACCCCACACCTGACA 2152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822014645280