Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3133 194 1e-44 seq2310 105 5e-18 seq5346 98.7 7e-16 seq2115 98.7 7e-16 seq1358 89.7 4e-13 >seq3133 Length=7630298 Score = 194 bits (214), Expect = 1e-44 Identities = 338/489 (69%), Gaps = 2/489 (0%) Strand=Plus/Minus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 || || ||||| || || || || |||||||||||||| |||||||||||||| || ||| Sbjct 1022107 GGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACTTC 1022048 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACAT-TGTG 84355 ||| || | || || || || |||| || || | ||| || || | |||| Sbjct 1022047 CATGTCTGAAGGAAATCTTTCACAGAATCCACGAAGCGATCTCTCTTCTCTTTGTCTGTG 1021988 Query 84356 CATGAAATAAAACGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGGTG 84415 | ||| | || || || | | ||||| || || ||||| || || || || |||| Sbjct 1021987 AA-GAAGAAGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGTC 1021929 Query 84416 CGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCA 84475 || | || |||| | ||||| || ||||| |||||||| || || || ||||| Sbjct 1021928 AGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCCA 1021869 Query 84476 AGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTT 84535 | || | |||||||| ||||| || | || |||||||||||||| || | || ||| Sbjct 1021868 GGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTTT 1021809 Query 84536 AAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTT 84595 ||||| | || || ||||| |||||||| |||| || |||||| || || | || Sbjct 1021808 GAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTCCTT 1021749 Query 84596 GAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGA 84655 | | ||||| || |||| || |||||||| || || ||||||||||| | || | Sbjct 1021748 CAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATGAGT 1021689 Query 84656 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAAC 84715 | ||| || | || || || || || || || | ||| || ||||||||||| Sbjct 1021688 CAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTCAAC 1021629 Query 84716 AAAATACGC 84724 || ||||| Sbjct 1021628 GAAGTACGC 1021620 >seq2310 Length=6428792 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||| ||||| ||| | || |||| || || Sbjct 5746416 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAACCCTCA 5746475 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| |||||| || || || ||| | ||| | |||| Sbjct 5746476 GACACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5746535 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 || | || ||||| || |||||||| ||||||||| | | ||| | ||||||||| Sbjct 5746536 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTACA 5746593 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | |||||||||||||| || || || ||||| ||||| | ||||| || Sbjct 5746594 ACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTCTGCGAGGTGG 5746642 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || ||| | || || || |||||||| ||||| ||| |||| ||| | Sbjct 5744588 CAAGATGCAGATTTTTGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCC 5744647 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || ||||| || ||| || |||||||| | || | | Sbjct 5744648 TTCGGACACAATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGA 5744707 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| |||||| | |||||||| |||||||| || |||||| | || || | || || Sbjct 5744708 CCAGCAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTA 5744767 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| || ||||||||||| || ||||| ||||| | ||| | || || || Sbjct 5744768 CAACATCCAGAAGGAATCCACACTTCACTTGGTACTCCGTCTGCGTGGTGG 5744818 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || ||||| || || ||||| ||| | || |||| || | Sbjct 5745731 AATGCAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTC 5745790 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| || || || || || ||| | || | |||| Sbjct 5745791 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCA 5745850 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTAC 22010 || | || ||||| || |||||||| ||||||||| | | ||| | |||||||| Sbjct 5745851 GCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTAC 5745908 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||||||||| || || || ||||| ||||||| ||||| || Sbjct 5745909 AACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTTTGCGAGGTGG 5745958 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||||||||| || | ||| |||| || | Sbjct 5744820 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5744879 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || || || || | || | |||| Sbjct 5744880 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5744939 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| |||||||| || ||||| ||| || | || ||||| Sbjct 5744940 CAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGAACATTGTCTGACTACAAC 5744999 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| ||||| | ||| | || || || Sbjct 5745000 ATCCAGAAGGAATCCACACTTCACTTGGTACTCCGTCTGCGTGGTGG 5745046 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||||||||| || | ||| |||| || | Sbjct 5745048 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5745107 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || || || || | || | |||| Sbjct 5745108 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5745167 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| ||||| || || ||||| | ||| || | || ||||| Sbjct 5745168 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGAACATTGTCTGACTACAAC 5745227 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| ||||| | ||| | || || || Sbjct 5745228 ATCCAGAAGGAATCCACACTTCACTTGGTACTCCGTCTGCGTGGTGG 5745274 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || || || ||||| ||||| || |||| ||| | || Sbjct 5745504 ATGCAAATTTTTGTTAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCTTCA 5745563 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| || || ||||| || ||| | || | |||| Sbjct 5745564 GATACCATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 5745623 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || |||||||| || ||||| | || ||| | || | | |||||||| Sbjct 5745624 CAACGTCTCATCTTTGCCGGTAAACAGTTGGAGGATGGACGTACACTCTCTGATTACAAC 5745683 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || || || ||||||| ||| | ||||| ||| Sbjct 5745684 ATTCAGAAGGAATCCACACTCCACTTGGTATTGCGTCTGCGAGGTGGA 5745731 >seq5346 Length=541963 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || |||||||| || || || || || ||||| ||| | | Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || || |||||||| || | ||| | ||||| Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| |||||||| |||||| | ||||| | ||| | ||||||| ||| Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||| ||| || ||| |||| ||| | ||| ||||||| Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || |||||||| || || || || || ||||| ||| | | Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || || |||||||| || | ||| | ||||| Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| |||||||| |||||| | ||||| | ||| | ||||||| ||| Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||| ||| || ||| |||| ||| | ||| ||||||| Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 360781 >seq1358 Length=322254 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| || || | ||| | |||||||||||||||| |||||||| |||||| | ||| Sbjct 61 GATAAGGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 120 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 || | ||| | | ||||| |||||||| || ||| ||| || ||| |||| ||| Sbjct 121 GACAATAGGACTTTATCTGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 180 Query 22047 CGTTTACGAGGAGG 22060 | ||| ||||||| Sbjct 181 AGATTAAGAGGAGG 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358100480192488