Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq2386 102 2e-18 >seq2386 Length=7418803 Score = 102 bits (112), Expect = 2e-18 Identities = 217/320 (68%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 3161 TGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTCA 3220 ||||| | || || | ||| || | | | |||| ||||||| || | |||||| ||| Sbjct 6764228 TGCACACTCAGAATTTTTATGCGTTCCGTTTCTTTATCTGCGAGGTGTTGAACTTTATCA 6764169 Query 3221 ACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTACG 3280 |||| |||| ||||||| |||||| | ||| | | || || || | | ||||| Sbjct 6764168 ACGTGGTCGGTCAGATATATTTCATGGACTTCTTCCTTGACGGCGAGTTCTCGACGTACG 6764109 Query 3281 GAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCCATCCGAACATGACGAACCCCATGA 3340 | | | || ||||| | || | | ||| | || | || || ||||||| Sbjct 6764108 GCAGGGACGTGGTGCGCTTCACCGAG-ATGGAGCC-AGAGGAGCGCGAAGA-CCCCATGG 6764052 Query 3341 AGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCC 3400 ||| || ||||| | | | || || || || |||||||||||||| ||||| || Sbjct 6764051 CGCGTGTGTTTCCCAAAGTGACCAAGTGCACCTTCCACAAATACGGTCCCTCGGGAACCG 6763992 Query 3401 TGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACA 3460 || | || | || || || ||| | || || |||| | |||||||||||||||||| Sbjct 6763991 TGCAGAAGTTTGACGGCCTGTGCGTTCTGCCTCTGAACATCGTCAACGAGAAGATCTACG 6763932 Query 3461 TTTTCCTCTGGTTCTGGTTC 3480 | || || |||||||||||| Sbjct 6763931 TGTTTCTGTGGTTCTGGTTC 6763912 Score = 91.5 bits (100), Expect = 4e-15 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 |||||||||| | | |||||| | || | |||||||||| | ||||| |||| Sbjct 6764717 CCGTGAAGGGGCTTCTCAAGCTTGACTCCGTTTGCATCGACAATAATGTGTTCCGCTTGC 6764658 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 | ||| || ||||||||||||| | |||||||| || || |||| || ||||| |||| Sbjct 6764657 ACTACAAGGCCACCGTGATCATCTTGATCGCGTTCTCGCTGTTGGTCACCTCGCGCCAGT 6764598 Query 2795 ACTTCGGAAAGCTCATAGATTGC 2817 || |||| | | |||||| ||| Sbjct 6764597 ACATCGGCGACCCCATAGACTGC 6764575 Score = 84.2 bits (92), Expect = 5e-13 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 3377 ACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGA 3436 |||| | |||| | |||||| |||| |||| | |||||||| || ||| || Sbjct 6841749 ACAAGTTCGGTTCGTCGGGCGAAGTGGAGCGGCACGACGCGCTCTGCATTCTGCCGCTGA 6841690 Query 3437 ACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| |||||||||||||||||| | |||||||||||||||||| Sbjct 6841689 ACGTCGTCAACGAGAAGATCTACGTCTTCCTCTGGTTCTGGTTC 6841646 Score = 77.0 bits (84), Expect = 8e-11 Identities = 84/112 (75%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 ||||| || ||||| | |||||| || ||| | | | | |||| | |||||||| Sbjct 6832096 TGTACGTTCCACAAGTTCGGTCCATCAGGCAGCATACAGACACACGATAGCCTCTGCATA 6832155 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGT 3478 || ||| ||| | ||||||||||||| |||||| ||| |||||||||||| Sbjct 6832156 CTGCCGCTCAACATCGTCAACGAGAAGACCTACATCTTCATCTGGTTCTGGT 6832207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479239422000