Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3133 212 5e-50 seq2310 131 1e-25 seq5346 123 2e-23 seq2115 123 2e-23 seq1358 87.8 2e-12 >seq3133 Length=7630298 Score = 212 bits (234), Expect = 5e-50 Identities = 355/509 (70%), Gaps = 7/509 (1%) Strand=Plus/Plus Query 20446 GCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTT 20505 || || || || |||||||| || || || ||| |||| || || || ||||| || Sbjct 1021620 GCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTACCAATT 1021679 Query 20506 CCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAAC 20565 || ||| || ||||||| | || || ||| | ||||||||||| || ||||| |||||| Sbjct 1021680 CCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAAC 1021739 Query 20566 GACGCGTTAAAGTTG-TCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGG 20624 ||| || ||| || || | |||| |||| | ||||| || ||| || Sbjct 1021740 GACAGTTTGAAGGAAATCGAAGGC----AGTTTCCAAGCTCTTCAACGATCATGCAGCGG 1021795 Query 20625 CCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAA 20684 ||| || |||| |||||| | || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1021796 CCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAA 1021855 Query 20685 AGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAA 20744 || | || || ||||| || || |||||||| |||||||||||| ||||| | || Sbjct 1021856 GGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAA 1021915 Query 20745 ACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCC 20804 || || ||| | |||||| | |||||||| ||||| || |||||| | | ||||| Sbjct 1021916 ACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCC 1021975 Query 20805 GTTTTATCATATGCACGATCCGATCGTA-CGCCAAGTTTTCATCGATTCTGTGGAAGAGT 20863 || | || | | ||| | | | | | | ||| | ||||||||| |||| | Sbjct 1021976 CTTCT-TCTTCTTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGATT 1022034 Query 20864 TTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGCA 20923 | | ||| ||||| ||||| ||||| || || || || ||||| || || || || | Sbjct 1022035 TCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTA 1022094 Query 20924 AAGGTGCGAATCCGAACGTGGGCGATCCC 20952 | || || ||||| || | ||| |||| Sbjct 1022095 AGGGAGCTAATCCAGACCTTGGCAGTCCC 1022123 >seq2310 Length=6428792 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | || ||||| || ||||||||||||||| Sbjct 5746645 ATACCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCG 5746586 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| || ||||| || ||| |||||||||| || ||||| ||| Sbjct 5746585 GAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGA 5746526 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| ||| ||| | |||| | | |||| |||||| | || ||| Sbjct 5746525 GGGATACCTTCCTTGTCTTGAAT-TTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTC 5746467 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 5746466 CACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || |||| || ||||| ||||| || ||||| || | || ||| |||||| Sbjct 5745484 ACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCG 5745425 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || ||||| || |||| ||||| || || || || ||||||||||| ||||| | Sbjct 5745424 AGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 5745365 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || ||||| | ||||| ||||| | || ||| || || | || | |||||| Sbjct 5745364 ATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTTG 5745305 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || |||||||||||||| Sbjct 5745304 CCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||||||| | |||||| |||||| || ||||| || Sbjct 5745928 GTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTGTTTGCCG 5745869 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| || ||||| || || || ||||| ||||| ||||| ||| Sbjct 5745868 GCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCTTTA 5745809 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||| || || | ||| | || || || || | || Sbjct 5745808 ACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTCTTTCCTGTTAAGGTC 5745749 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 5745748 TTCACAAAGATCTGCAT 5745732 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||| || || || | || ||||| || |||||||||||||| Sbjct 5745733 ATTCCACCTCGCAGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCA 5745674 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || | |||||||| || |||||||||| || ||||| || Sbjct 5745673 GAGAGTGTACGTCCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGG 5745614 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| ||| | | |||| ||| || | | ||| Sbjct 5745613 GGGATACCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCA 5745554 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | || ||||| |||| || || |||||||| |||||| || Sbjct 5745553 ACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCATGCCT 5745500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || ||||| || || |||||||| || Sbjct 5744821 ATACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCA 5744762 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || ||||| || || |||| | | ||| ||||| || Sbjct 5744761 GACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGG 5744702 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| |||||||| |||||| || | | ||||| ||||| | | || Sbjct 5744701 GGGATGCCCTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCC 5744642 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| |||| || || |||||||||||||| Sbjct 5744641 ACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCAT 5744592 >seq5346 Length=541963 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || | || ||| ||||| ||||||| ||| |||||||||||| || |||||| Sbjct 231465 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 231406 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | ||| | | ||||| | |||||||||||| | || || | ||||||||| |||| Sbjct 231405 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 231346 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | || |||||||| || ||||| ||||| | |||| || || | | ||| | Sbjct 231345 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 231286 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 | |||| || | || || || || | || ||||||||||||||||||| Sbjct 231285 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCATGG 231235 >seq2115 Length=629047 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || | || ||| ||||| ||||||| ||| |||||||||||| || |||||| Sbjct 360779 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 360838 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | ||| | | ||||| | |||||||||||| | || || | ||||||||| |||| Sbjct 360839 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 360898 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | || |||||||| || ||||| ||||| | |||| || || | | ||| | Sbjct 360899 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 360958 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 | |||| || | || || || || | || ||||||||||||||||||| Sbjct 360959 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCATGG 361009 >seq1358 Length=322254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || | || ||| ||||| ||||||| ||| |||||||||||| || ||||| Sbjct 196 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAG 137 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | ||| | | ||||| | |||||||||||| | || || | ||||||||| |||| Sbjct 136 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 77 Query 114274 GAATGCCTTCTTTGTC 114289 | || ||||| || || Sbjct 76 GGATTCCTTCCTTATC 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420105869198064