Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2310 131 4e-25 seq5346 123 6e-23 seq2115 123 6e-23 seq1114 105 2e-17 seq1358 91.5 3e-13 >seq2310 Length=6428792 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||||||||| |||| ||| || || || ||||||| ||||| || |||||| Sbjct 5746378 TCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAG 5746319 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||| ||||| ||||| || || ||||| || ||||| || Sbjct 5746318 ATGAGACGTTGCTG---GTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACA 5746262 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | ||| |||||||| ||||| ||||| || || | ||||| Sbjct 5746261 TTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTA 5746202 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 5746201 ACAAAGATCTGCAT 5746188 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | ||| ||||||||||| || ||||| | | Sbjct 5746870 CCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAG 5746811 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || ||||| || |||| ||||| || |||||||||| | ||| || ||| Sbjct 5746810 AGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTG---GTCTGGG 5746754 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| ||||| ||||| || || || || || || || | || | ||| Sbjct 5746753 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCG 5746694 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || |||| |||||||| || |||||||| Sbjct 5746693 ACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | |||| ||| ||| || ||||| || ||||| | Sbjct 5745274 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5745215 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || ||||||||||| | || || || || ||||||| | ||| || ||| Sbjct 5745214 AATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTG---GTCTGGG 5745158 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || |||||||| ||||| || ||||| || | || | ||| Sbjct 5745157 GGGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCC 5745098 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || || |||| |||||||| || |||||||| Sbjct 5745097 ACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | ||| ||||||||||| || ||||| | | Sbjct 5746186 CCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAG 5746127 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || ||||| || |||| ||||| || |||||||||| | ||| || ||| Sbjct 5746126 AGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTG---GTCTGGG 5746070 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || ||||| || || || || || || || | || | ||| Sbjct 5746069 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCG 5746010 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || |||| |||||||| || |||||||| Sbjct 5746009 ACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || || || || || ||||| || |||||| Sbjct 5747290 TCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAG 5747231 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || |||||| || ||||| || || |||||||| ||||| || Sbjct 5747230 ATAAGACGTTGCTGG---TCTGGGGGGATACCTTCCTTGTCTTGGATTTTGGCTTTAACA 5747174 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| ||||| || |||| |||||| Sbjct 5747173 TTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTG 5747114 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 5747113 ACGAAGATCTGCAT 5747100 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| ||||| | || ||||| || ||||| | || || || || || Sbjct 5745467 TTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAA 5745408 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || || ||||||| || ||||| || || || ||||| ||||| || Sbjct 5745407 GATAAGACGTTGCTG---ATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTAC 5745351 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | ||| || || | ||||| || || || |||| ||||| Sbjct 5745350 ATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTT 5745291 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 5745290 CACAAAAATCTGCAT 5745276 >seq5346 Length=541963 Score = 123 bits (136), Expect = 6e-23 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || ||||||||||| |||||||| |||| | || | |||||| |||||||| || Sbjct 231433 GTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCA 231374 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || | |||||| ||||| ||||||||||||||| ||||| || ||| Sbjct 231373 GCAAATATAAGTCTCTGTTGG---TCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCT 231317 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || |||| ||| | ||||||||| | ||||| ||||| || || | Sbjct 231316 TTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTTCCTGTTAAT 231257 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| Sbjct 231256 GTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 123 bits (136), Expect = 6e-23 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || ||||||||||| |||||||| |||| | || | |||||| |||||||| || Sbjct 360811 GTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCA 360870 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || | |||||| ||| ||||||||||||||||| ||||| || ||| Sbjct 360871 GCAAATATAAGTCTCTGTTG---GTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCT 360927 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || |||| ||| | ||||||||| | ||||| ||||| || || | Sbjct 360928 TTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTTCCTGTTAAT 360987 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| Sbjct 360988 GTCTTTACAAAAATCTGCAT 361007 >seq1114 Length=8361563 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | || ||||| ||||| || ||||| || ||||| Sbjct 2710486 TTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAA 2710427 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | || ||| ||| || || ||||| || || ||||||||||| || || Sbjct 2710426 GATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATT 2710367 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| || | ||| || || | ||| || || || || || || || || || Sbjct 2710366 TTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTAC 2710307 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 2710306 GAAGATCTGCATT 2710294 >seq1358 Length=322254 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || ||||||||||| |||||||| || | | || | |||||| |||||||| || Sbjct 164 GTACTTTCTTTTTGAATATTATAATCAGATAAAGTCCTATTGTCTTCCAATTGTTTACCA 105 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || | |||||| ||||| ||||||||| ||||| ||||| || ||| Sbjct 104 GCAAATATAAGTCTCTGTTGG---TCTGGAGGGATTCCTTCCTTATCTTGGATCTTGGCT 48 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 || || || || |||| ||| | ||||||||| | ||||| || Sbjct 47 TTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179570182997816