Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3133 188 7e-43 seq2310 107 2e-18 seq1114 84.2 2e-11 >seq3133 Length=7630298 Score = 188 bits (208), Expect = 7e-43 Identities = 298/426 (70%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 28086 TGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGACCGTTC 28145 |||||||||| | || || ||||| ||||| ||||| |||||| | ||| | Sbjct 1021699 TGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAACGACAGTTTGAAGGAAATCG 1021758 Query 28146 CCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGA 28205 ||||||||| | || || || || || ||| ||| |||| || ||||| || | | Sbjct 1021759 AAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGCGAAGATTTCAAAGTTTCAA 1021818 Query 28206 TCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGC 28265 | |||||||| ||||| || |||||||||| |||||||| | ||| | ||||| |||| Sbjct 1021819 TTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGTCTTTCTTCCTGGAATGAGC 1021878 Query 28266 CGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACTTGAAGG 28325 | ||||||||||||||||| || ||||| | ||| ||||| || || | || Sbjct 1021879 CATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAAGCCAGGCCTGACCTTAAAA 1021938 Query 28326 TGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTCT-----TTCACATGC-ACG 28379 | || | || ||||| |||||||| || | || || |||| |||||| | | | Sbjct 1021939 TCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCCCTTCTTCTTCTTCACAGACAAAG 1021998 Query 28380 ACGCGACCGTGCGCCAAACGTTCATCGATTCCGTCGTGGACTTTCTGCTGACCTGGAAGT 28439 | || | ||| ||| | ||||| || || || || | ||| ||||||| Sbjct 1021999 AGAAGAGAGATCGC------TTCGTGGATTCTGTGAAAGATTTCCTTCAGACATGGAAGT 1022052 Query 28440 TCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCCCGATG 28499 |||||||||| || || ||||||||||| || || ||||| || ||||| ||||| || Sbjct 1022053 TCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAATCCAGACC 1022112 Query 28500 TCGGCA 28505 | |||| Sbjct 1022113 TTGGCA 1022118 Score = 116 bits (128), Expect = 4e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358 ||||||| | |||||| | |||||| ||||| || | || ||||||||||||||||| | Sbjct 7349248 TGGCCTCAATGTTGCCGAGGTCGCCAACGTGGCGTATGGTGGCGTTGGGAGCGCCGTGCT 7349307 Query 57359 CGCTGC-CGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCG 57417 | |||| | ||||||||||||| | || || || ||||||||||| || |||| || Sbjct 7349308 C-CTGCTTGTTGGGGTTAAAGTGGGCCCCAGCAGATGTGCAGCCGTTTGTGTTGTCACCA 7349366 Query 57418 AACTCGTGAACGTGAAATCCGTG 57440 ||||| || ||||| || ||||| Sbjct 7349367 AACTCATGCACGTGGAAACCGTG 7349389 Score = 113 bits (124), Expect = 4e-20 Identities = 143/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 124669 GAGGAACGTCTTATGAGTTTCGCCGAATGGCCGGCGTCGAATCACGTGTCGCCGCAGCAG 124728 ||||| || |||| || |||| | | ||||| ||| || | | ||||||| ||||| Sbjct 2611337 GAGGAGCGGCTTAAGACGTTCGACAAGTGGCC--CGTGGACTTCC-TGTCGCCCGAGCAG 2611393 Query 124729 CTCGCGTCCGCCGGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGC 124788 || || | ||||||||||||| | ||| ||||||||| || || ||||| ||||| Sbjct 2611394 CTAGCACGCAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTCTGT 2611453 Query 124789 AAAGTCGAAATTATGCGATGGCAGCCCGGCGACGA-TCCGCTAACGGACCACAAACGATG 124847 ||||||||||| ||||| ||| | |||||||| |||| || ||||||| | || || Sbjct 2611454 AAAGTCGAAATCATGCGCTGGGTGGAGGGCGACGACCCCGCGAA-GGACCACCAGCGCTG 2611512 Query 124848 GGCGCCTCAGTG 124859 ||| || || || Sbjct 2611513 GGCCCCGCAATG 2611524 >seq2310 Length=6428792 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||| | || || || | | || ||||| ||||||||||| ||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || ||||| |||| |||| ||||| || ||||| ||||| Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||| | ||||| | || | |||||| | | ||||| Sbjct 5746522 ATACCTTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCAC 5746464 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || || ||||| |||||||| Sbjct 5746463 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | || || |||| | || |||||||| || |||||||| Sbjct 5745503 GCCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCG- 5745445 Query 138447 CATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | ||| |||| || ||||| || ||||| | | |||| ||||| || || || || Sbjct 5745444 -AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGG 5745386 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || ||||| ||||| ||| |||| | ||||| | ||| | ||||| | | || Sbjct 5745385 GGAATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTC 5745327 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||| || |||| || || |||||||||||||| Sbjct 5745326 AACCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| |||||| || || || | | || ||||| ||||||||||| || Sbjct 5745730 CCACCTCGCAGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCAGAG 5745671 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| | |||||||||| | |||| ||||| || ||||| || || Sbjct 5745670 AGTGTACGTCCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 5745611 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||| || ||| | | || | ||| || | | || ||| Sbjct 5745610 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAACC 5745551 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || ||||||| || || |||||||| |||||| || Sbjct 5745550 TCCAATGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCATGCCT 5745500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | || ||||| || ||||||||||| | Sbjct 5745046 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744987 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || ||||| |||| | |||| | | ||| ||||| || || Sbjct 5744986 AATGTTCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744927 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||||| ||| | | ||| | ||||| | | ||||| Sbjct 5744926 ATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACT 5744867 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| || || ||||| |||||||| Sbjct 5744866 TCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||| | || || || | | || ||||| ||||||||||| ||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || ||||| |||| |||| ||||| || ||||| || || Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || ||| | | || | |||||| | | |||||| Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACC 5745779 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || | || || ||||| |||||||| Sbjct 5745778 TCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | |||||||| || ||||||||||| Sbjct 5747327 GCCGCCGCGAAGACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGA 5747268 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| | ||||| |||| |||| ||||| || ||||| || || Sbjct 5747267 GAGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGG 5747208 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| |||||| ||| | | || | |||||| | | |||||| Sbjct 5747207 GATACCTTCCTTGTCTTGGATTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCAC 5747148 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || || || |||||||| Sbjct 5747147 CTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | || ||||| || ||||||||||| | Sbjct 5745274 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5745215 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || |||| | |||| | | ||| ||||| || || Sbjct 5745214 AATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5745155 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||||| ||| | | ||| | ||||| | | ||||| Sbjct 5745154 ATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACT 5745095 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| || || ||||| |||||||| Sbjct 5745094 TCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | ||||| ||||| | ||||| |||| Sbjct 5747065 GACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCAACTGTTTGCCGGCG 5747006 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || ||||| || || |||||||| ||||| ||| || ||| | Sbjct 5747005 AAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACA 5746946 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| | ||||| |||| || | || || || || | || || Sbjct 5746945 TTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTA 5746886 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 5746885 ACGAAGATCTGCAT 5746872 Score = 82.4 bits (90), Expect = 8e-11 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | || ||||| || ||||||||||| | Sbjct 5744818 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744759 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| | | ||| ||||| || || Sbjct 5744758 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744699 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | || | |||| | ||| | ||||| | | |||||| Sbjct 5744698 ATGCCCTCTTTGTC-TTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCAC 5744640 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAAT 138624 ||| | || | || || || |||| || || |||||||||||||| ||| |||| Sbjct 5744639 CTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCAT--CTTGTAAT 5744584 >seq1114 Length=8361563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | | ||| || || || | | || ||||| || |||||||||||| | Sbjct 2710521 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGAC 2710462 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||| |||| |||| | | || || || || || Sbjct 2710461 AATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 2710402 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | ||||| | ||| | ||||| | | || || Sbjct 2710401 ATGCCCTCTTTGTC-TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 2710343 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | |||||||| || || |||||||| || |||||||| Sbjct 2710342 CTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496227835323840