Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3133 163 3e-35 seq2310 122 8e-23 >seq3133 Length=7630298 Score = 163 bits (180), Expect = 3e-35 Identities = 295/429 (69%), Gaps = 2/429 (0%) Strand=Plus/Plus Query 22379 CCGAACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAAC 22438 || || ||| | ||| | | |||||||| | ||||| ||||| || || ||||||||| Sbjct 1021680 CCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAAC 1021739 Query 22439 GACGCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGA 22498 ||| |||| | || || ||| | || | ||||| || ||| | | Sbjct 1021740 GACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1021799 Query 22499 GCCGATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGC 22558 | |||||||| || | || |||||||||||||| || | || || || ||||| || Sbjct 1021800 GAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGT 1021859 Query 22559 GTGTCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGA 22618 | || || ||||| || || |||||||||||||||||||| ||||| | | ||| | Sbjct 1021860 CTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAA 1021919 Query 22619 GCGAATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTT 22678 || | ||| | || ||| | || | || ||||| || ||||| | | ||||| || Sbjct 1021920 GCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCCCTTC 1021979 Query 22679 TATCATATGCAC-GACAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTT 22737 | || | | ||| ||||| | |||| | ||| | ||||| ||| |||| | | Sbjct 1021980 T-TCTTCTTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGATTTCCT 1022038 Query 22738 GATCACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGG 22797 || ||||||||||| ||||| || ||||| |||||||| || || ||||| ||||| Sbjct 1022039 TCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGG 1022098 Query 22798 GGCGAATCC 22806 || ||||| Sbjct 1022099 AGCTAATCC 1022107 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTG 50713 || || |||||||| || ||||| |||||||| | |||||||||||||||||| | Sbjct 7349250 GCCTCAATGTTGCCGAGGTCGCCAACGTGGCGTATGGTGGCGTTGGGAGCGCCGTGCTCC 7349309 Query 50714 CGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 50773 | || |||||||| | || || || ||||||||||| | |||| || || Sbjct 7349310 TGCTTGTTGGGGTTAAAGTGGGCCCCAGCAGATGTGCAGCCGTTTGTGTTGTCACCAAAC 7349369 Query 50774 TCGTGCACGTGGAACCCGTG 50793 || ||||||||||| ||||| Sbjct 7349370 TCATGCACGTGGAAACCGTG 7349389 >seq2310 Length=6428792 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||||||||| || ||||| || Sbjct 5746186 CCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAG 5746127 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| ||||||||||| || ||| ||||||||| |||||| || || || Sbjct 5746126 AGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 5746067 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || ||| | | |||| |||||| | | |||||| Sbjct 5746066 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACT 5746007 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| |||| || || ||||| |||||||| Sbjct 5746006 TCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||||||||| || ||||| || Sbjct 5746870 CCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAG 5746811 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| ||||||||||| || ||| ||||||||| |||||| || || || Sbjct 5746810 AGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 5746751 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || ||| || ||| | | |||| |||||| | | |||||| Sbjct 5746750 ATGCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACT 5746691 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| |||| || || ||||| |||||||| Sbjct 5746690 TCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || || || ||||| || | Sbjct 5744818 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744759 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || || ||||||||| |||||| || || || Sbjct 5744758 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744699 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||| ||||| || || ||| | | ||| | ||||||| | ||| || Sbjct 5744698 ATGCCCTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 5744639 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || || |||||||||||||| Sbjct 5744638 TCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCAT 5744592 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || |||||||| || | || ||||||||||| ||||| |||||| Sbjct 5746414 CCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAG 5746355 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| ||||||||||| || ||| |||| | || ||||| || || || Sbjct 5746354 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5746295 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || || | | |||| |||||| | || ||| Sbjct 5746294 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACT 5746235 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || || || || | || || ||||| |||||||| Sbjct 5746234 TCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | |||||| |||| || || || ||||| |||||||| || | |||||| Sbjct 5745493 AAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGA 5745434 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || || || |||| | || |||||||| || || ||||| ||| Sbjct 5745433 CCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCC 5745374 Query 127016 TTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 ||||| ||| ||| |||| | | ||| | ||||||| || || || | || Sbjct 5745373 TTGTCT-TGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGT 5745315 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||||||| |||| || || |||||||||||||| Sbjct 5745314 GATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || ||||| ||||||||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| ||||||||||| || ||| |||| | || ||||| || ||||| Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| ||| || || | | || | |||||| | || || Sbjct 5746522 ATACCTTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCAC 5746464 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 5746463 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | ||||| || | || || || || ||||| ||||||||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| ||||||||||| || ||| |||| | || ||||| || || || Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || || | | |||| |||||| | || || Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACC 5745779 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || | || || ||||| |||||||| Sbjct 5745778 TCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475467681369280