Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1114 98.7 1e-15 seq1673 95.1 1e-14 seq1390 86.0 8e-12 >seq1114 Length=8361563 Score = 98.7 bits (108), Expect = 1e-15 Identities = 462/728 (63%), Gaps = 17/728 (2%) Strand=Plus/Plus Query 115894 CGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 115953 ||||| | || ||||| | ||| |||| |||||| ||||||| || || |||||||| Sbjct 3014021 CGTCTTTGGTAAATGTTTGATGTGAATGGTTCAAAGGACTCATTATTTCCTAAGATTTGT 3014080 Query 115954 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTA 116013 ||||| || ||||| ||||| || || | | ||| |||||| || || | Sbjct 3014081 GCTGTAGATGCTGTAGGCATTGGAGCTAATAAAAGTGAGTTGCGAAGCCCATGTTTGGCA 3014140 Query 116014 ATGCGTTCCTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTCCCACATAT 116071 || ||| || | | |||||| ||| | || ||| |||||||| | Sbjct 3014141 ATTTTTTCTTTTAAAACAGACCAGTCCCATAGATCAG--TTGGAGTTTTATCCCACATGT 3014198 Query 116072 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 116131 || | || | ||| |||||| | ||| ||| ||| |||| ||| ||||| Sbjct 3014199 CATATTGTAAGATGCCTTGGCTTGTTGGACTTCCTTCATATGTACTATAAACTCCCTCTT 3014258 Query 116132 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 116191 | ||||| ||| | || ||||| | ||| ||| ||| || || || || || | Sbjct 3014259 TTTGCGCCAGTTCACAACTGGCCTCTAATGCTCCGTAATATATAGTTTCGAAGATTTGTT 3014318 Query 116192 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCG 116251 || | | | || || || ||| | | | || | | | |||| ||| | Sbjct 3014319 GGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATGCGCAATAGTACAAATGTATCAG 3014378 Query 116252 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 116311 | | |||||| || || | || || || | |||| ||| ||||| || || Sbjct 3014379 CTAAACCTTGCACTCCAATACCTATAGGTCTGTGTCGCATGTTAGAGTTCTTTGCTTCAG 3014438 Query 116312 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 ||| || |||||||| ||| |||| |||| || |||| |||| |||||| | Sbjct 3014439 GCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATCGTCTTTGTAA 3014498 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT---CTTCATTGACATACTTAGGAA 116428 ||| | | |||| |||| | || || | ||||||||||| || | | Sbjct 3014499 CTTCTTTCAACTTT--GTAA----AGTTGTATGTTTTATCTTCATTGACAAACCTGTTTA 3014552 Query 116429 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAAT 116486 || ||||| || | |||||| || | ||||| || | ||||||||| | ||| Sbjct 3014553 ATGCAATTGAAGCTAAATTACAAACTGCAACTTCATCTGCTGA--AGTGTACTCAACAAT 3014610 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 ||| || |||||||| | ||||| ||||| | || |||||||| ||| |||| Sbjct 3014611 TTCTGTGCACAAATTACTGCATTTAATTGTGCCAAGATTTTTTTGATTACTTTTTCTGTT 3014670 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 ||| | ||| ||||| ||||| ||||| || || || ||| ||| | | | || || Sbjct 3014671 ACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCCACTTGTGCTTCTATTATTGC 3014730 Query 116607 CTTCCATA 116614 ||||||| Sbjct 3014731 TTTCCATA 3014738 >seq1673 Length=160240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 ||||||||| || ||||| || || ||| || |||||||| || || ||| ||| Sbjct 44988 AGCAAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACC 45047 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| | ||||| |||||||| |||| | ||||| ||| ||||| || Sbjct 45048 AGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAAT 45107 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG--GCAAAGGAGCGGGACTTTGTATC- 127695 || || ||||| || || || ||| || || | ||||| | || ||| |||| Sbjct 45108 TCCTTCAACACAAGCAAATGC-GATA-ACTCTGGTAGCAAAAG---TAGATTTTTTATCT 45162 Query 127696 --AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCT 127753 || ||| |||| ||||| | ||||| || | ||| |||| | || | || || Sbjct 45163 TTAATCCATTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCA 45222 Query 127754 TCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 127813 | || || | || ||||| ||||| | || ||| ||||||| ||| ||||| Sbjct 45223 TTAAGAAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATAC 45282 Query 127814 GTTTC 127818 |||| Sbjct 45283 ATTTC 45287 >seq1390 Length=76047 Score = 86.0 bits (94), Expect = 8e-12 Identities = 205/305 (67%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || ||||| || || ||| ||||||||||| || || ||| ||| Sbjct 54798 AGCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACC 54739 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| | ||||| |||||||| |||| | ||||| ||| ||||| || Sbjct 54738 AGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAAT 54679 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG--GCAAAGGAGCGGGACTTTGTATC- 127695 || || ||||| || || || ||| || || | ||||| | || ||| | || Sbjct 54678 TCCTTCGACACAAGCAAATGC-GATA-ACTCTGGTAGCAAAAG---TAGATTTTTTGTCT 54624 Query 127696 --AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCT 127753 | ||| |||| ||||| | ||||| || | ||| |||| | || | || || Sbjct 54623 TTTATCCATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCA 54564 Query 127754 TCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 127813 | || || | || ||||| ||||| | || ||| ||||||| ||| ||||| Sbjct 54563 TTAAGAAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATAC 54504 Query 127814 GTTTC 127818 |||| Sbjct 54503 ATTTC 54499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613464469223520