Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2310 125 2e-23 seq1114 123 6e-23 >seq2310 Length=6428792 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || ||||| |||| ||||||||||| ||| || | ||||||| Sbjct 5744803 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCT 5744744 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| || || || ||| || Sbjct 5744743 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5744684 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || ||| | ||||| | | || || ||||| ||||| ||| Sbjct 5744683 TGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 5744624 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || ||||||||||| || Sbjct 5744623 TTGCCCGTCAAGGTCTTCACAAAAATCTG 5744595 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | |||||| || || ||||| || | |||||| |||| | || Sbjct 5745725 TCGCAGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCAGAGAGTGT 5745666 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||| |||| ||| || ||||| ||||||||||| |||||||| || || || Sbjct 5745665 ACGTCCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACC 5745606 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| || || || | ||| |||| | ||| || ||||| Sbjct 5745605 TTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAACCTCCAA 5745546 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||||||||| Sbjct 5745545 TGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTG 5745507 Score = 105 bits (116), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || ||||| || | |||||| || | | || | |||||| Sbjct 5746627 AGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCT 5746568 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||||||||| |||||||| ||| || ||||| || Sbjct 5746567 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5746508 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || || || | |||||||| | ||| || || | ||||| || Sbjct 5746507 TGAAT-TTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGT 5746449 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 5746448 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 5746419 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || ||||| |||| ||||||||||| ||| || | ||| ||| Sbjct 5745259 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCT 5745200 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| || || ||||| || Sbjct 5745199 TCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5745140 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || |||||| || || ||| | ||||| | | ||| || || || ||||| || Sbjct 5745139 TGGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGT 5745081 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 5745080 TTTGCCAGTCAAGGTCTTGACAAAGATCTG 5745051 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||| |||||||||| |||||||| | | || | |||||| Sbjct 5745487 AGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCT 5745428 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| ||||| ||||| || || ||| ||||| || Sbjct 5745427 TCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCT 5745368 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| || ||| | ||||| | | ||| || || || ||||| || Sbjct 5745367 TGAAT-TTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGT 5745309 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||||||||| || Sbjct 5745308 TTTGCCTGTCAAGGTCTTCACAAAAATCTG 5745279 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||| | | || | ||||| Sbjct 5747083 AGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCC 5747024 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || ||||||||||||||||| |||||||| || || ||||| || Sbjct 5747023 TCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746964 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | ||| || || | ||||| ||| Sbjct 5746963 TGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTC 5746904 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 5746903 TTTCCCGTTAAGGTCTTAACGAAGATCTG 5746875 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || ||||| ||||||| ||||||||||| | || Sbjct 5746180 CGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTA 5746121 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||| || ||||||||||| | | ||||||||| || || ||| Sbjct 5746120 CGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCT 5746061 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| |||||| | | ||| || || || Sbjct 5746060 TCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAG 5746001 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | || || ||||| || || Sbjct 5746000 GTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTG 5745963 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || ||||| ||||||| ||||||||||| | || Sbjct 5746864 CGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTA 5746805 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||| || ||||||||||| | | ||||||||| || || ||| Sbjct 5746804 CGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCT 5746745 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| |||||| | | ||| || || || Sbjct 5746744 TCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAG 5746685 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | || || ||||| || || Sbjct 5746684 GTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTG 5746647 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| |||||||| |||| ||||||||| | | || Sbjct 5747320 CGAAGACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTA 5747261 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||| || ||||||||||| ||||| |||||||| || || ||| Sbjct 5747260 CGGCCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCT 5747201 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || || || |||| |||||| | | || || ||||| Sbjct 5747200 TCCTTGTCTTGGAT-TTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAA 5747142 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 5747141 GGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTG 5747103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || ||||| || | |||||| || | | || | |||||| Sbjct 5745943 AGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCT 5745884 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||||||||| |||||||| || || ||||| || Sbjct 5745883 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5745824 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | ||| || || | ||||| ||| Sbjct 5745823 TGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTC 5745764 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || |||||||| || || Sbjct 5745763 TTTCCTGTTAAGGTCTTCACAAAGATCTG 5745735 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || ||||| ||||||| || || || | | || | |||||||| ||||| Sbjct 5746391 GTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCTTCTAGCTG 5746332 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||||||||| |||||||| || || ||||| || || ||||| Sbjct 5746331 TTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 5746272 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || |||| |||||| | | ||| || || | ||||| ||||| ||||| Sbjct 5746271 GGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTCCCGT 5746212 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || ||||| || || Sbjct 5746211 TAAGGTCTTAACAAAGATCTG 5746191 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || ||||| |||| ||||||||||| ||| || | || ||| Sbjct 5745031 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCT 5744972 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| || || ||||| || Sbjct 5744971 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5744912 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || |||||| || || ||| | ||||| | | ||| || || || ||||| || Sbjct 5744911 TGGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGT 5744853 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 5744852 TTTGCCAGTCAAGGTCTTGACAAAGATCTG 5744823 >seq1114 Length=8361563 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| |||| || | ||| || ||||| ||||| |||| ||||||||| | ||| || Sbjct 2710516 TCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGT 2710457 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| ||| || ||||||||||| | | ||||| || || ||| || Sbjct 2710456 ACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCC 2710397 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| ||| || || || ||||| ||||| | | ||| || || | Sbjct 2710396 CTCTTTGTCTTGAAT-TTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTA 2710338 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || |||||||| || ||||| || || || || Sbjct 2710337 ACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTG 2710298 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | ||||||||||| || ||||||||||||||| | || ||| |||| |||||| Sbjct 2710416 AAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCCGACTACAACA 2710475 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||||| || || || |||||| | || ||||| |||||| Sbjct 2710476 TCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGA 2710516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178837435313324