Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3133 239 5e-58 seq2310 105 8e-18 seq1114 93.3 5e-14 >seq3133 Length=7630298 Score = 239 bits (264), Expect = 5e-58 Identities = 646/982 (66%), Gaps = 25/982 (3%) Strand=Plus/Plus Query 98734 AAAGTTACGGGGGCTTATTTTGTAGAATGGGGTGTTTACGATCGCAAATTTCCAGCAGAT 98793 |||||| || || || || || ||||||||||| ||| | ||||| || | ||| Sbjct 1021608 AAAGTTGTCGGAGCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGAT 1021667 Query 98794 AAAGTGCCTATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAGGC 98853 || || || || ||| |||| || |||||||| |||||||| || |||||||||||| Sbjct 1021668 CGTGTACCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGC 1021727 Query 98854 GACGGTATAAACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAATCG 98913 || || || ||||||||| | || || | || ||| | | | ||| ||| Sbjct 1021728 GATGGCATCAACGACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCA 1021787 Query 98914 TGCGATAAGAGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGAAA 98973 ||| | || |||||||| || || |||||| | | |||||| ||||| Sbjct 1021788 TGCAGCGGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAG 1021847 Query 98974 CCACAACAGGGTGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCTTATG 99033 |||||| ||||| | || | || ||||| ||| ||||| || || ||||| ||| Sbjct 1021848 CCACAAAAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATG 1021907 Query 99034 GCCATACGTAAACA---CAACCCACATCTAAAAATCCTACCCAGTATCGGTGGTTGGACT 99090 | | |||||| || || | || ||||||||||| |||||||| |||||| Sbjct 1021908 TCTCT---TAAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACT 1021964 Query 99091 CTTAGCGACCCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGTGTTCGTAGACTCG 99150 ||| || ||||||| || ||| | || | | ||| | | ||||| || || Sbjct 1021965 CTTGCAGATCCCTTCTTCTTCTTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCT 1022024 Query 99151 GTTCGTGAATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTGGGAGTTT 99210 || || ||||| ||| ||||| || |||||||||||||| ||||| ||||| || Sbjct 1022025 GTGAAAGATTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTC 1022084 Query 99211 CCTGGCGGAAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAACACTTAT 99270 |||||||| ||||| || || || || | || | ||| | |||||||| | ||| Sbjct 1022085 CCTGGCGGTAAGGGAGCTAATCCAGACCTTGGCAGTCCCA---AGGACGGAGATGTTTAC 1022141 Query 99271 GTCACACTTCTGCAAGAGCTTCGTTTGATGCTTGACGAATTGGGTGTGGCCAATAAACGT 99330 || | | || | || | ||| ||| | |||| | | | || | || Sbjct 1022142 GTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACCT-----TTCCGAAGAGACCG 1022196 Query 99331 GT-----TTACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCGACGTGGTCG 99385 || ||||| ||||| ||| | | || || | ||||| || | || |||| Sbjct 1022197 GTAAGAAATACGAGCTGACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCG 1022256 Query 99386 ATTACTCTACAGC-CAGTCAATATTTGGACCATGTGTTTTTAATGAGTTACGATTTTAAA 99444 ||||| | || ||| | || ||||||| | || | ||||||||||| || ||| Sbjct 1022257 ATTACAGTGAGGCTCAG-AAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAA 1022315 Query 99445 GGCGCCTGGTCCAACACCGACTTGGGTCATCAAACACCATTGTATGCACCATCGTGGAAC 99504 ||||||||||| ||| | | |||||||| || || | || || || | |||||| Sbjct 1022316 GGCGCCTGGTCTAACGATACCCTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGAAC 1022375 Query 99505 TCCGAAGAGAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAAAAGTGCC- 99563 | | || | |||||||| || | || || ||| | | | | || ||| | Sbjct 1022376 CCTAAGGAAACTTACACAACTGACTTTGGTGTGAAATA--TTTGCTTGCTCAAGGTGTCA 1022433 Query 99564 -TTCTCACAAGATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAGTGCATG 99622 || | |||||||| ||||| || || |||||||| | || |||| || || || Sbjct 1022434 ACCCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGTCCACA 1022493 Query 99623 ACTACAAAAATAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCACCTGGG 99682 | ||| || ||||||| || || || || || ||||| || ||||| || ||| Sbjct 1022494 ATTACGAAGATAATAATCCCTTCACAGGCAACGCGACAGGACCTGTCAAAGGTACTTGGC 1022553 Query 99683 AAAACGGTGTTGTTGATTATAG 99704 || ||||||| |||||||| || Sbjct 1022554 AAGACGGTGTAGTTGATTACAG 1022575 >seq2310 Length=6428792 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || | || ||| |||| || ||||| |||||||| || Sbjct 5745010 TCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCTTCCAGCTGTTTGCCGGCAAAG 5744951 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||||| ||| || |||| | Sbjct 5744950 ATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTT 5744891 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | |||||| || | |||||||||||||| |||| || || ||| Sbjct 5744890 TCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACA 5744831 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 5744830 AAGATCTGCAT 5744820 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || | || || |||| || |||||||||||||| || Sbjct 5745238 TCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAG 5745179 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||||| ||| || |||| | Sbjct 5745178 ATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTT 5745119 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | |||||| || | |||||||||||||| |||| || || ||| Sbjct 5745118 TCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACA 5745059 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 5745058 AAGATCTGCAT 5745048 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| |||||||| || || || || | || || ||||| ||||||||||| Sbjct 5746151 CTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAA 5746092 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||| |||||| ||| | | Sbjct 5746091 GATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATT 5746032 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | || ||||||||||| |||| || || || Sbjct 5746031 CTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGAC 5745972 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 5745971 AAAGATCTGCAT 5745960 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| ||||||| || | || ||| ||||||||||| || ||||| Sbjct 5746414 CCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAG 5746355 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| ||||||||||| || | || |||||||| | || Sbjct 5746354 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5746295 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| || | || | | |||||| | |||||| Sbjct 5746294 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACT 5746235 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || ||||| | || ||||||||||| ||||| Sbjct 5746234 TCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| |||||||| || || || || | || || ||||| ||||||||||| Sbjct 5746835 CTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAA 5746776 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||| || |||||| ||| | | Sbjct 5746775 GATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGGATCTTGGCCTTAACATT 5746716 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | || ||||||||||| |||| || || || Sbjct 5746715 CTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGAC 5746656 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 5746655 AAAGATCTGCAT 5746644 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| ||||| | ||||| || | ||| |||||||||||||||||||| | Sbjct 5745504 TGCCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCG 5745445 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || ||||||||||| || || || || | || ||||| || | | Sbjct 5745444 AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGG 5745385 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| || || || | | | | ||||| | ||| | Sbjct 5745384 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAA 5745325 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||||||||| |||| || || ||||| || ||||| Sbjct 5745324 CCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || || || || | || || | ||| ||||||||||| Sbjct 5747063 CTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAA 5747004 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | | |||||||| |||||| || | | Sbjct 5747003 GATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATT 5746944 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | |||||| || | |||||||| || ||||| | || ||||| Sbjct 5746943 CTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAAC 5746884 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 5746883 GAAGATCTGCAT 5746872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| ||| |||||| ||||| |||||||| || || || || | Sbjct 5747315 ACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCC 5747256 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||| ||||||||||| || | || |||||||| | || | | ||||| Sbjct 5747255 ATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTT 5747196 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || || | || | | ||||| | ||||| |||| ||||| Sbjct 5747195 GTCTTGGATTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGAT 5747136 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || || ||||| ||||| Sbjct 5747135 GGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| ||||| | |||| || | ||| ||||| || || ||||| ||||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| ||||||||||| || | || |||||||| | || Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| || | || | | ||||| | |||||| Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACC 5745779 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || || | || || |||||||| |||||| Sbjct 5745778 TCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCATT 5745731 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| ||||| || || || | || || ||||| ||||||||||| Sbjct 5746606 TCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAG 5746547 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGC-GT 46521 || | || |||||||| | || | | ||||||| | ||| || ||| | | | Sbjct 5746546 ATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTGAATTTTGGCTTTAACATT 5746488 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | |||||| || | |||||||| ||||| |||| || || || Sbjct 5746487 CTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 5746428 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 5746427 AAAGATCTGCAT 5746416 >seq1114 Length=8361563 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || ||||||| | | |||||||| || | ||| ||||| ||||| ||||||||| Sbjct 2710524 TTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCG 2710465 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || | || || | || || | ||| ||||||||||| ||||| | ||||| || | Sbjct 2710464 GACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGT 2710405 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||| ||||| || ||| || | | | | ||||| | ||| Sbjct 2710404 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCA 2710345 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||| |||||||| ||||| || ||||| || ||||| |||||| Sbjct 2710344 ACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565199031145440