Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3133 297 1e-75 seq5346 95.1 8e-15 seq2310 95.1 8e-15 seq2115 95.1 8e-15 seq1114 93.3 3e-14 >seq3133 Length=7630298 Score = 297 bits (328), Expect = 1e-75 Identities = 803/1214 (66%), Gaps = 30/1214 (2%) Strand=Plus/Minus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 || || | ||| ||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 1022809 TTTCCGAGACCCATGTTCATGGCGTTTAATAGTTCACCATTGTCTGCATCAATCTCCCAC 1022750 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 || |||||||| |||| || ||| | |||||||| ||||| | | |||| || Sbjct 1022749 GCGAATAAACCGCCCAGCTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGA 1022690 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 || |||||||| | ||| ||| | | || | | ||||| |||| || ||| Sbjct 1022689 GGATTATCGTACGTTATTAAGTCACCAGTCGATGGCCTGAACACGTAAGGAGCTTCGGCA 1022630 Query 5991 ATGTTATCATAGAATTGTACAC---TTTCGTCGTACCTATTTA-----CAATATCTTTAT 6042 | ||||||||| || | || | |||| | || | |||| | || ||| | | Sbjct 1022629 ACGTTATCATA--ATGGAACTCCCATTTCCCCATAGCGATTTCATTTGCTATTTCTCTGT 1022572 Query 6043 AATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACG 6102 |||| | ||| ||| || ||| |||||||| || || | | || | ||||| || | Sbjct 1022571 AATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCTGTCGCGTTGCCTGTGAAGG 1022512 Query 6103 GATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCT 6161 ||||||| | |||| | | | || |||||| ||||||||||||| |||||||| ||||| Sbjct 1022511 GATTATTATCTTCGTAATTG-TGGACACCGGTCCAGCCGCGTCCGTACATAGCTACACCC 1022453 Query 6162 ACTACTAATTTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTT 6221 || || | || | | | |||| |||| | ||| || | | |||| | ||| Sbjct 1022452 ACCACAATCTTCTTAGGGTTGACACCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTT 1022393 Query 6222 GTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTT 6281 |||||| |||| ||| || ||| | |||||||||||||| || ||| ||| | | Sbjct 1022392 GTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCGAGGGTA 1022333 Query 6282 TCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGT 6341 || | ||||| |||||||| || ||||| |||| | || || | || | || Sbjct 1022332 TCGTTAGACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCCATGTACTTC 1022273 Query 6342 TGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTT 6401 || || || | ||||||||||| | || || || | || |||| ||||| || Sbjct 1022272 TGAGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATAGCAGAGGTC 1022213 Query 6402 AGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTT- 6460 || | || ||||| ||| || | | ||| | |||||| || || ||||| Sbjct 1022212 AGCTCGTATTTCTTACCGGTCTCTTCGGAAAGGTCGTTCAACATTTCACGCAATTCCTTC 1022153 Query 6461 -TAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCAC 6519 | || | ||| | | | | ||| || | |||| || || || || | Sbjct 1022152 ATTAATTCAACGTAAACATCT--CCGTCC-TTG--GGACTGCCAAGGTCTGGATTAGCTC 1022098 Query 6520 CTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCA 6579 | |||||||| || || |||||||| || || || |||||||| || ||||| || | | Sbjct 1022097 CCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACTTCCATGTCTGAA 1022038 Query 6580 AAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAA 6639 || || |||| ||| || || || || || || ||| | || | | | Sbjct 1022037 GGAAATCTTTCACAGAATCCACGAAGCGATCTCTCTTCTCTTTGTCTGTGAAGAAGAAGA 1021978 Query 6640 ACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGC 6699 | ||||| ||| ||||| || || || || || | ||| | | || || || Sbjct 1021977 AGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGTCAGGCCTGGCTT 1021918 Query 6700 GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACAC 6759 | || | | ||| | ||| |||||||| |||||||| || || || ||| | || Sbjct 1021917 GTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCCAGGAAGAAAGAC 1021858 Query 6760 CTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTC 6819 | |||||||| || ||||| || |||| ||| ||||| | ||||||||||||| | Sbjct 1021857 CCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTTTGAAATCTTCGC 1021798 Query 6820 GGCCGGCGCACGATTTTTGCAACGCCT-CAAACGAACTGGGTATTTGTTGTTTAAGCGCA 6878 ||||| ||| ||| ||| | || | |||| || | ||| | || || | Sbjct 1021797 GGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCG-ATT--TCCTTCAAAC-TG 1021742 Query 6879 TCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTA 6938 ||||| | |||||||| || |||||||| ||||| |||||||| | ||| || |||||| Sbjct 1021741 TCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATGAGTCAGATTA 1021682 Query 6939 GGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAA 6998 ||||| || | || | || ||| ||| ||| ||||||||||| || ||||| Sbjct 1021681 GGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTCAACGAAGTAC 1021622 Query 6999 GCGCCCACAACATT 7012 || || ||||| || Sbjct 1021621 GCTCCGACAACTTT 1021608 >seq5346 Length=541963 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| | || ||||||||||| ||||||||||||| ||| | | || ||| Sbjct 231445 ACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCC 231386 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||| || | | ||| || || | || | |||||||| || Sbjct 231385 AATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGG 231326 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||| | || | | || || | ||| || |||||||| ||||| || Sbjct 231325 ATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTT 231266 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 || ||||| || ||||| || ||||||||| | |||||| Sbjct 231265 CCTGTTAATGTCTTTACAAAAATCTGCATGGGGGGTGTTT 231226 >seq2310 Length=6428792 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| |||||||| || | ||| ||| || || || || || || | | Sbjct 5745046 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744987 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || | || |||| ||||| ||| |||| || || | |||||| || | ||| Sbjct 5744986 AATGTTCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744927 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| |||||| ||| | | | | |||||| | | |||||| Sbjct 5744926 ATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACT 5744867 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || || || || || ||||||||||| Sbjct 5744866 TCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| |||||||| || | ||| ||| || || || || || || | | Sbjct 5745274 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5745215 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || |||| || || ||| |||| || || | |||||| || | ||| Sbjct 5745214 AATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5745155 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| |||||| ||| | | | | |||||| | | |||||| Sbjct 5745154 ATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACT 5745095 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || || || || || ||||||||||| Sbjct 5745094 TCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| | ||||| || | ||| |||||||| ||||||||||||| Sbjct 5746414 CCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAG 5746355 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||||| ||| | || || | ||| ||||| || | ||| Sbjct 5746354 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5746295 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || || ||||| || | | ||||| | | |||||| Sbjct 5746294 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACT 5746235 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || |||||||| || || || ||||||||||| Sbjct 5746234 TCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||||||| |||||||| || | ||| ||| || || || || ||||||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||||| ||| | || || | ||| ||||| || | ||| Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || || ||||| || | | ||||| | | |||||| Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACC 5745779 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || ||||| || || || ||||||||||| Sbjct 5745778 TCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || |||||||| || | ||| || ||||| || || || || | | || || Sbjct 5747086 CGAAGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCA 5747027 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| ||||| ||| | || || | ||| ||||| || | ||| | ||||| ||| Sbjct 5747026 TCCTCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTG 5746967 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||||| || | | ||||| | | |||||| || | ||| || Sbjct 5746966 TCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATG 5746907 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| || || |||||||||||||| Sbjct 5746906 GTCTTTCCCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 >seq2115 Length=629047 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||| | || ||||||||||| ||||||||||||| ||| | | || ||| Sbjct 360799 ACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCC 360858 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||| || | | ||| || || | || | |||||||| || Sbjct 360859 AATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGG 360918 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||| | || | | || || | ||| || |||||||| ||||| || Sbjct 360919 ATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTT 360978 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 || ||||| || ||||| || ||||||||| | |||||| Sbjct 360979 CCTGTTAATGTCTTTACAAAAATCTGCATGGGGGGTGTTT 361018 >seq1114 Length=8361563 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || || || |||| ||| ||| |||| ||||| ||||| ||| | || Sbjct 2710486 TTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAA 2710427 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TC 39645 || || | |||||||| | || | ||| |||||||| ||||| ||| | | Sbjct 2710426 GATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATT 2710367 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 ||| || ||||| | | ||| || || || || || ||||||||||| | |||||| Sbjct 2710366 TTCGATA--GTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTT 2710309 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 2710308 ACGAAGATCTGCAT 2710295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347346010564676