Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4120 89.7 6e-13 seq1924 87.8 2e-12 seq3128 84.2 3e-11 seq1390 82.4 9e-11 >seq4120 Length=16292344 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||||| ||| || |||||||| |||||| || |||||||| | || | ||||| Sbjct 7436009 TCATCCCTAGAAATCAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCACGCTTCTTC 7436068 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 | ||| || || | ||| ||||||||||||||||||||||||||| || || || Sbjct 7436069 AACCAGAATATTGACGCAAAGCTTCCAGAAAAGAAGATGCCCTCCACAGCAGCAAAGGCA 7436128 Query 119637 AATAGACGCTCAGCAAAAGGTCGAGACT---TGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 | || | ||| |||| | | || || ||| ||| | || ||||||| ||| Sbjct 7436129 ACTATCCTTTCACCAAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTCTGCC 7436188 Query 119694 TTACGCTCTATGCAGGGGACAGTTT 119718 || || || ||||| | ||||| Sbjct 7436189 TTCTTCTTTACACAGGGTAAAGTTT 7436213 >seq1924 Length=7285565 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| ||| | Sbjct 3882123 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 3882182 Query 136775 TTGGGAACAGC-TTTTAGATATATTTTTTGTATGTATATGTAAA 136817 | || ||||| |||| | ||| || ||| || || || |||| Sbjct 3882183 TGGGCCACAGCATTTTTGTTATTCTTGTTGGATTTAAATTTAAA 3882226 >seq3128 Length=5114887 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC-GT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||| Sbjct 4784596 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 4784655 Query 136776 TGGGAACAGCTTTTAGATATATTTTTTGTAT 136806 |||| | ||||| ||| |||||| ||| Sbjct 4784656 TGGGCCAATTTTTTAACTATTTTTTTTCTAT 4784686 >seq1390 Length=76047 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/146 (73%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAG----CAAAG 119551 |||||||| ||| || |||||||| || ||||| ||||| |||| |||| Sbjct 54797 GCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATT--TGAAAACGACAAA- 54741 Query 119552 TCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAA 119611 ||||||||||| ||||||||||||| ||| ||||| | | ||| |||| |||||| Sbjct 54740 -CCAGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAA 54682 Query 119612 GATGCCCTCCACACAGGCGAAAGCGA 119637 || || || ||||| || || |||| Sbjct 54681 AATTCCTTCGACACAAGCAAATGCGA 54656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588934977821600