Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1114 176 5e-39 seq1673 91.5 2e-13 seq1390 87.8 2e-12 >seq1114 Length=8361563 Score = 176 bits (194), Expect = 5e-39 Identities = 474/718 (66%), Gaps = 19/718 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | ||| | ||||||||| | |||||||| || ||||||||||| || || Sbjct 3014030 TAAATGTTTGATGTGAATGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGAT 3014089 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 ||||| |||||||| || | ||||| ||| ||||| || | || || ||| Sbjct 3014090 GCTGTAGGCATTGGAGCTAATAAAAGTGAGTTGCGAAGCCCATGTTTGGCAATTTTTTCT 3014149 Query 106055 TTGAGAACATCCCAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCACATATCAAATTGA 106111 || | |||| ||||| | ||| | || | | |||| | |||||||| ||| |||| Sbjct 3014150 TTTAAAACAGACCAGTCCCATAGATCAGTTGGAGTTTTA---TCCCACATGTCATATTGT 3014206 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 | | |||||| || ||| || ||| |||| ||| || | || ||| Sbjct 3014207 AAGATGCCTTGGCTTGTTGGACTTCCTTCATATGTACTATAAACTCCCTCTTTTTGCGCC 3014266 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 | |||||| || ||||| | | | ||| ||| || ||||| ||||| | || | Sbjct 3014267 AGTTCACAACTGGCCTCTAATGCTCCGTAATATATAGTTTCGAAGATTTGTTGGTTAAGT 3014326 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 | | ||||| || ||| ||| ||| | | | |||| ||| || | |||| Sbjct 3014327 TTAATTGCTTCTTCACTTTCATATGGAATGCGCAATAGTACAAATGTATCAGCTAAACCT 3014386 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTCAACG 106348 || || || | ||| ||||||||||||||||| ||||| |||| ||| | || Sbjct 3014387 TGCACTCCAATACCTATAGGTCTGTGTCGCATGTTAGAGTTCTTTGCTTCAGGC---ACT 3014443 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 || |||||||| ||||| | | || || |||| || | ||||||| | ||| Sbjct 3014444 GGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATCGTCTTTGTAACTTCT 3014503 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 | | ||| | | | | || | |||||||||||| || | | || ||| Sbjct 3014504 TTCAACTTTGTAAAGTTGTATGT---TTTATCTTCATTGACAAACCTGTTTAATGCAATT 3014560 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTCTGTAC 106526 || || ||||| ||||| || ||||| || | |||||||| | ||||||||| | Sbjct 3014561 GAAGCTAAATTACAAACTGCAACTTCATCTGCTGA--AGTGTACTCAACAATTTCTGTGC 3014618 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 |||| || | ||||| || || | ||| ||||| ||||| ||| |||| || | || Sbjct 3014619 ACAAATTACTGCATTTAATTGTGCCAAGATTTTTTTGATTACTTTTTCTGTTACATGAAT 3014678 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 | ||||| |||||||| || || || || ||| |||| | | ||||| ||||| Sbjct 3014679 CTTTGTACAGCATGTATGGTGTGCCTGTTTCCACTTGTGCTTCTATTATTGCTTTCCA 3014736 >seq1673 Length=160240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 |||||||| || ||||| ||||||||| ||||||||||||||| || | | || Sbjct 44989 GCAAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCA 45048 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| | ||||| ||||| | || | ||| |||| || ||||| || Sbjct 45049 GGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCA-AATGCTCCACTAAAGAAAAT 45107 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 || || ||||| ||||| || | || | || | | | || ||| ||| | || Sbjct 45108 TCCTTCAACACAAGCAAATGCGATAA--CTCTGGTAGCAAAAG-TAGATTTTTTATCTTT 45164 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTA 117493 || |||||||| ||||| | |||||||| | |||| |||||| Sbjct 45165 AATCCATTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTA 45208 >seq1390 Length=76047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/212 (71%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||| ||||||||| ||| ||||||||||| || | | || ||||||||||| Sbjct 54785 TGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCATGAGACCT 54726 Query 117346 CGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 | ||||| ||||| | || | ||| |||| || ||||| || || || ||||| Sbjct 54725 CTTTTCTTTAACCAGAAGATCGAAGCA-AATGCTCCACTAAAGAAAATTCCTTCGACACA 54667 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 ||||| || | || | || | | | || ||| ||| |||| | |||||||| Sbjct 54666 AGCAAATGCGATAA--CTCTGGTAGCAAAAG-TAGATTTTTTGTCTTTTATCCATTTCAA 54610 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTA 117493 |||||| | |||||||| | |||| |||||| Sbjct 54609 TGCCCAATCAGCCTTCTTTTTAATAGATGGTA 54578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589939707837280