Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2310 165 2e-35 seq5346 131 4e-25 seq2115 131 4e-25 seq1114 120 7e-22 seq1358 98.7 2e-15 >seq2310 Length=6428792 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || ||||| |||||||||| || || | |||||||| ||||| Sbjct 5746619 GTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTG 5746560 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || ||||| ||||||||||| || ||||| |||||||||||||| Sbjct 5746559 TTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATTTT 5746500 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || |||||||||||||| || |||||| |||||||| | ||||| || || Sbjct 5746499 GGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGTCTTGCCAGT 5746440 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 5746439 CAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || ||||| |||||||| || | ||| || | |||||||||||||| Sbjct 5745479 GTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCGAGCTG 5745420 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||| ||||| || ||||| ||||||||||| |||||||||||||| Sbjct 5745419 CTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTT 5745360 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| |||||||| ||| || || | || | || || ||||| Sbjct 5745359 GGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTTGCCTGT 5745300 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 5745299 CAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| || |||||||||||||| ||||| ||||||| || || | |||||| Sbjct 5746399 AACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCT 5746340 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || ||||| || || |||||||| || ||||| |||||||| || || ||||| |||||| Sbjct 5746339 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746280 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || || || ||||| |||||||| || ||||||||| || || | ||| Sbjct 5746279 TGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTC 5746220 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || || || | ||||| Sbjct 5746219 TTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || ||||| |||||||||| || || | |||||||| ||||| Sbjct 5745935 GTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTG 5745876 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || ||||| |||||||| || || ||||| |||||||| || || Sbjct 5745875 TTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 5745816 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| |||||||| || |||||| || ||||| | ||||||||||| Sbjct 5745815 GGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTCTTTCCTGT 5745756 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || || || | |||||| Sbjct 5745755 TAAGGTCTTCACAAAGATCTGCATT 5745731 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || ||||| || | || || | ||||| || | ||| Sbjct 5747303 GTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCAACTG 5747244 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||||||| ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 5747243 TTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATTTT 5747184 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| |||||||||||| ||||| || | ||| | ||||| ||||| Sbjct 5747183 GGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGT 5747124 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 5747123 CAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||||||||| || ||||| || | || || | ||||| || ||||| Sbjct 5746163 GTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCTAGCTG 5746104 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 5746103 TTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 5746044 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| |||||||| ||| ||| ||||| | ||||| || || || || Sbjct 5746043 GGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTGCCAGT 5745984 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 5745983 CAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||||||||| || ||||| || | || || | ||||| || ||||| Sbjct 5746847 GTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCTAGCTG 5746788 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || || |||||||| || |||||||| || ||||| || || Sbjct 5746787 TTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGGATCTT 5746728 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| |||||||| ||| ||| ||||| | ||||| || || || || Sbjct 5746727 GGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTGCCAGT 5746668 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 5746667 CAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| || || || || ||||| || | | || | |||||||| ||||| Sbjct 5744795 GTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTG 5744736 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | || || |||||||| || ||||| |||||||||||||| || Sbjct 5744735 TTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGAATCTT 5744676 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| ||||||||| ||||| || | ||| | ||||| || || Sbjct 5744675 GGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCCGT 5744616 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 5744615 CAAGGTCTTCACAAAAATCTGCAT 5744592 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || ||||| || || ||||| |||||||| | || || | ||||| Sbjct 5745716 CAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCAGAGAGTGTACGTCCATC 5745657 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | ||| ||||| || ||||| || ||||| |||||||| || || ||||| || || Sbjct 5745656 CTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTATC 5745597 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || || || ||||||||||| || ||| ||| || || | || | || Sbjct 5745596 TTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAACCTCCAATGTGATGGT 5745537 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || || || | |||||| Sbjct 5745536 CTTGCCAGTCAAGGTCTTAACAAAAATTTGCAT 5745504 >seq5346 Length=541963 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || || || |||||||||||||| ||||||| | ||| Sbjct 231458 TCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGT 231399 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| | || ||||| || || ||||||| |||||||||||||| || || Sbjct 231398 CCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCC 231339 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || || || |||||||| || || ||| ||| ||||| | Sbjct 231338 TTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAA 231279 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| || || ||||| || | ||||| Sbjct 231278 AGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || || || |||||||||||||| ||||||| | ||| Sbjct 360786 TCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGT 360845 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| | || ||||| || || ||||||| |||||||||||||| || || Sbjct 360846 CCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCC 360905 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || || || |||||||| || || ||| ||| ||||| | Sbjct 360906 TTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAA 360965 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| || || ||||| || | ||||| Sbjct 360966 AGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1114 Length=8361563 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||| || | |||||| || || || || || || ||||| |||| | || | Sbjct 2710512 AGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGT 2710453 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||| || || |||||||| | || ||| || ||||| |||||||| ||| Sbjct 2710452 CCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCT 2710393 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || || || ||||| || ||| || || | || Sbjct 2710392 TTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTT 2710333 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||||||| | |||||| Sbjct 2710332 ATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 >seq1358 Length=322254 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || || || |||||||||||||| ||||| | | ||| Sbjct 189 TCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAGATAAAGT 130 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| | || ||||| || || ||||||| |||||||||||||| || || Sbjct 129 CCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCC 70 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTC 195095 ||| || ||||| || || || || |||||||| || || ||| ||| ||||| Sbjct 69 TTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109402392721724