Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1673 297 2e-75 seq1390 273 3e-68 seq4120 120 4e-22 >seq1673 Length=160240 Score = 297 bits (328), Expect = 2e-75 Identities = 591/864 (68%), Gaps = 26/864 (3%) Strand=Plus/Plus Query 36909 TCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGAT 36968 ||||| || ||||| || || | ||||| ||||||||||||||||| || ||||| | | Sbjct 44725 TCGAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATAAAATCGAAAGGATTGGCT 44784 Query 36969 GTATTATATATAGTA----CTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTC 37024 || || || || || || || | | || ||| | || || || |||||||| Sbjct 44785 GTGTTGTAAATCTTATCTTCTCCAAGGT--TTA--TCAATAATCTGTCGGCTACAAATTC 44840 Query 37025 TATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAA---TTGCATC 37081 || || || ||||| |||| | || || ||||| || || ||||| | || || | Sbjct 44841 AATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACTGGTAAACTTTCA-C 44899 Query 37082 TTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTC 37141 || || ||| || ||| ||| |||| || || ||| |||| || ||| | Sbjct 44900 TTAAA--AATTCTTGTTCGATTTTTACTGCCTCAACAACGATATCCTTGAT--CTTATCG 44955 Query 37142 AGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTC 37201 || |||| ||| ||||||| ||||| ||||| || ||||| | |||||| Sbjct 44956 CATTTATTGATAAGATAACTATTTAAC----AAACAAGCAAACTCGCAATGCAGACCTTC 45011 Query 37202 ATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAAT 37261 ||||| || || | |||||| ||||| | || || ||||| | ||||||||| || | Sbjct 45012 ATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTTTAA 45071 Query 37262 CCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTAC 37321 ||| || || | ||||| | |||| ||||||||| |||||||| |||||||| | Sbjct 45072 CCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCAACACAAGCAAATGCGAT 45131 Query 37322 AAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTT 37381 || | ||| | ||||| || | | ||| ||||||||| | |||||| ||||| Sbjct 45132 AACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCATTTCAAAGCCCAATCAGCCTT 45191 Query 37382 TAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATC 37441 ||||| | || ||||| | || || || | ||| |||||||| || ||| Sbjct 45192 CTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGGATC 45251 Query 37442 TGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTAT 37501 | ||||| ||||| || |||||| |||||||||||| || |||||||| ||| ||| Sbjct 45252 ACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAACTAC 45311 Query 37502 CTGAAAACCATAAAAACACCTAGCTTCAGATAATTG-AACATCGTTAAAAAACCTCTTAG 37560 ||| || ||||||||||| | || || | ||| | || || | ||||||| | | Sbjct 45312 CTGGAATCCATAAAAACATTTTGCCTC-TAAAATGGTGACTTCCTCGGAAAACCTTTCAA 45370 Query 37561 CTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAA 37620 | | || ||| || || |||||| ||| || || || ||||||| || | | || Sbjct 45371 CAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTGAAACAA 45430 Query 37621 AATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTT 37680 | | ||||||||| || ||| |||||||||| | ||| ||| | |||||||| Sbjct 45431 AGTATCTTTCATCTGGTGTTAAAGAATTCCAATCATATAAATCGGCTGAAAGATCAACTT 45490 Query 37681 CATCAACGGTCCAAAAACTTGCCAAT--GCACGTTTATACATCGTCCAAATATCATTATG 37738 | ||| ||||||||||| || | || |||| |||||| |||| ||||| | || Sbjct 45491 CTTCAGCGGTCCAAAAA--GAACATTCGGCTTGTTTGTACATCTTCCAGATATCGTGATA 45548 Query 37739 TTGTATTGGAAATATTACAAATCT 37762 || || || || | || ||||| Sbjct 45549 TTTAATAGGGAAAAGCACTAATCT 45572 >seq1390 Length=76047 Score = 273 bits (302), Expect = 3e-68 Identities = 584/861 (68%), Gaps = 20/861 (2%) Strand=Plus/Minus Query 36909 TCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGAT 36968 || || || ||||| || || | ||||| ||||||||||| ||||| || ||||| | | Sbjct 55061 TCAAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATGAAATCGAAAGGATTGGCT 55002 Query 36969 GTATTATATATAGTA-CTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTAT 37027 || || || || || || | | || | | || | | || || |||||||| || Sbjct 55001 GTGTTGTAAATCTTATCTTCCCCAAGGTTTATCAATAATC-TGTCGGCTACAAATTCAAT 54943 Query 37028 GTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAA---TTGCATCTTG 37084 || || ||||| |||| | || || ||||| || || || || | || || ||| Sbjct 54942 ATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACAGGTAAACTTTCA-CTTA 54884 Query 37085 AAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGT 37144 || ||| || ||| ||| |||| || || ||| |||| || ||| | | Sbjct 54883 AA--AATTCTTGTTCGATTTTTACTGCCTCAACAACAATATCCTTGAT--CTTATCGCAT 54828 Query 37145 TGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATC 37204 | |||| ||| ||||||| ||||| ||||| || ||||| | ||||||||| Sbjct 54827 TTATTGATAAGATAACTATTTAAC----AAACAAGCAAATTCGCAATGCAGACCTTCATC 54772 Query 37205 TCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCA 37264 || || || | |||||| ||||| | || || ||||| | ||||||||| || | ||| Sbjct 54771 TCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTTTAACCA 54712 Query 37265 AAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAG 37324 || || | ||||| | |||| ||||||||| ||||| || |||||||| | || Sbjct 54711 GAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCGACACAAGCAAATGCGATAAC 54652 Query 37325 ACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAA 37384 | ||| | ||||| || | | || |||||||| || |||||| ||||| Sbjct 54651 TCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATCCATTTCAATGCCCAATCAGCCTTCTT 54592 Query 37385 TTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGT 37444 ||||| | || ||||| | || || || | ||| |||||||| || ||| | Sbjct 54591 TTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGGATCACT 54532 Query 37445 TATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTG 37504 ||||| ||||| || |||||| |||||||||||| || |||||||| ||| ||| ||| Sbjct 54531 AATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAACTACCTG 54472 Query 37505 AAAACCATAAAAACACCTAGCTTCAGATAATTG-AACATCGTTAAAAAACCTCTTAGCTA 37563 || ||||||||||| | || || | ||| | || || | ||||||| | | | | Sbjct 54471 GAATCCATAAAAACATTTTGCCTC-TAAAATGGTGACTTCCTCGGAAAACCTTTCAACAA 54413 Query 37564 AGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 || ||| || || |||||| ||| || || || ||||||| || | | ||| | Sbjct 54412 GATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTGAAACAAAGT 54353 Query 37624 GTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCAT 37683 ||||||||| || ||| |||||||||| | ||| ||| | ||||||||| | Sbjct 54352 ATCTTTCATCTGGTGTTAAAGAGTTCCAATCATATAAATCGGCTGAAAGATCAACTTCTT 54293 Query 37684 CAACGGTCCAAAAACTTGCCAAT--GCACGTTTATACATCGTCCAAATATCATTATGTTG 37741 || ||||||||||| || | || |||| |||||| |||| ||||| | || || Sbjct 54292 CAGCGGTCCAAAAA--GAACATTCGGCTTGTTTGTACATCTTCCAGATATCGTGATATTT 54235 Query 37742 TATTGGAAATATTACAAATCT 37762 || || || | || ||||| Sbjct 54234 AATAGGGAAAAGCACTAATCT 54214 >seq4120 Length=16292344 Score = 120 bits (132), Expect = 4e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 37429 tttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 |||||| | ||| | || ||||||||||| || || ||||| |||||||| | || Sbjct 7436394 TTTCTTTAGGATCCCTAATGTAAGTATCAATCAGCAAGGAGTACATCTCAGAGTGTACAT 7436453 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA 37548 | || ||||| || || || |||||||| |||| |||||| | |||||| || | Sbjct 7436454 TCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTG 7436513 Query 37549 AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 |||| | || ||| || ||||||||||| |||||| ||| ||||| || || | || Sbjct 7436514 AAAATCGCTCTACTAGATTCTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAAAA 7436573 Query 37609 CATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654 ||| ||| ||||| || || ||| || ||| ||| |||||| Sbjct 7436574 CATGTTTAATAAAGTGCCTCTCACAATCCTTTAAACTTTCCCAATC 7436619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592275545134880