Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3133 345 3e-90 seq5346 179 3e-40 seq2115 179 3e-40 seq2310 149 5e-31 seq1114 141 7e-29 seq1358 136 3e-27 >seq3133 Length=7630298 Score = 345 bits (382), Expect = 3e-90 Identities = 729/1071 (68%), Gaps = 35/1071 (3%) Strand=Plus/Minus Query 42470 TCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAATACCCGT 42529 ||| || || || || || |||| ||||||||| || || |||||||| | || || Sbjct 1022576 TCTGTAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCTGTCGCGTTGCCTGT 1022517 Query 42530 GAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACATGGCCAC 42589 |||||||||||| | || ||||||| || |||||||| || ||||||||||| || || Sbjct 1022516 GAAGGGATTATTATCTTCGTAATTGTGGACACCGGTCCAGCCGCGTCCGTACATAGCTAC 1022457 Query 42590 GCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAA--AAGCGTTTGAACGGCATAA 42647 || | | || || | ||| || || ||| ||| || ||| | | || | Sbjct 1022456 ACCCACCACAATCTTCTTAGGGTTGACACCTTGAG-CAAGCAAATATTTCA-CACCAAAG 1022399 Query 42648 TCTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGATGGCCC 42707 || | |||||| ||| || |||||| ||||||| || || || ||||| || Sbjct 1022398 TCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCG 1022339 Query 42708 AA---ATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTATCC 42764 | ||| || ||||| || ||||| ||||| || ||||| | || || | ||| Sbjct 1022338 AGGGTATCG---TTAGACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCC 1022282 Query 42765 AAATAGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAATT 42824 | || || ||||| || |||||||||||| || || || ||| |||||||| Sbjct 1022281 ATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATA 1022222 Query 42825 GCGCTAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCTAGTTCGTCCAGCATGTCGCGC 42884 || |||| |||||||| | || || | || |||| || ||| || ||| Sbjct 1022221 GCAGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCGGAAAGGTCGTTCAACATTTCACGC 1022162 Query 42885 AATTCTCGTAACAAAACTACATACGTAAGA----CCGTCATTTTGAGGATCTCCAATTGT 42940 ||||| | | | || | || |||||| ||||| || || || | | || Sbjct 1022161 AATTC-CTTCATTAA--TTCA-ACGTAAACATCTCCGTCCTTGGGA----CTGCCAAGGT 1022110 Query 42941 C-GGATTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATT 42999 | ||||||||||| ||||| || || ||||||||||| ||||| || ||||| || || | Sbjct 1022109 CTGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACT 1022050 Query 43000 TCCAAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCGC 43059 |||| || | | || || || |||||||| || | | ||| | | || Sbjct 1022049 TCCATGTCTGAAGGAAATCTTTCACAGAATCCACGAAGCGATCTCTCTTCTCTTTGTCTG 1021990 Query 43060 TGAAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGAT 43119 |||| || | || || || | | ||||| ||||| || ||||||| | |||||| | Sbjct 1021989 TGAAGAAGAAGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGT 1021930 Query 43120 GAGGGTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTCC 43179 ||| | |||| ||| | ||| | |||||||||||||||||||| || ||||||| Sbjct 1021929 CAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCC 1021870 Query 43180 ACGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTT 43239 | || |||| ||| |||||||| ||||| | ||| |||||||||||||| || ||||||| Sbjct 1021869 AGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTT 1021810 Query 43240 TGAAGTCGCTTCGAC-CCGCA-CAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGA 43297 |||| || |||| |||| || ||| ||||||||||| |||||||| || Sbjct 1021809 TGAAATC--TTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTC 1021752 Query 43298 TTTTAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATG 43357 || |||||||| || ||||| || || ||||| || |||||||| |||||||| | ||| Sbjct 1021751 CTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATG 1021692 Query 43358 AGACAAATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTC 43417 || || ||| || | || || | ||||| ||| | ||| || |||||||| Sbjct 1021691 AGTCAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTC 1021632 Query 43418 TACAAAATAAGCGGCCACGGCTTTATCGGTGCCCAATTCGAAAGGTTTATTGTTTTCTTG 43477 || || || || | || |||| | | | || ||| || || | | |||| | Sbjct 1021631 AACGAAGTACGCTCCGACAACTTTTCCCGAAGTCTGTTTGAATGGCTTGT--TCTTCTCG 1021574 Query 43478 CCA----TGTATATGGCAAAGGATCTAAATGCGAACCGTCCGTATCAGCGA 43524 ||| |||| || ||||||| || ||| |||||| |||||||||| Sbjct 1021573 CCAAGGGTGTACAT--CAAAGGAGGTAGATGGCTACCGTCAGTATCAGCGA 1021525 >seq5346 Length=541963 Score = 179 bits (198), Expect = 3e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || ||||||||||| | |||||| ||||| || ||| ||||||||| ||||| |||||| Sbjct 231466 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 231407 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| || || |||||||| ||||| |||||||| | | |||||| || || Sbjct 231406 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 231347 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || |||||||||||||| || || ||||||| | || | ||| ||||| | ||| Sbjct 231346 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 231287 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGG 101471 ||||| | ||||| || || || ||||| || |||||||| |||||||||| Sbjct 231286 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCATGG 231235 >seq2115 Length=629047 Score = 179 bits (198), Expect = 3e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || ||||||||||| | |||||| ||||| || ||| ||||||||| ||||| |||||| Sbjct 360778 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCG 360837 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| || || |||||||| ||||| |||||||| | | |||||| || || Sbjct 360838 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 360897 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || |||||||||||||| || || ||||||| | || | ||| ||||| | ||| Sbjct 360898 GGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 360957 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGG 101471 ||||| | ||||| || || || ||||| || |||||||| |||||||||| Sbjct 360958 ACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCATGG 361009 >seq2310 Length=6428792 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| | || || || || || ||||| ||||| |||||||| || | Sbjct 5745502 CCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAA 5745443 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||| ||||| || | ||| || ||||| || ||| Sbjct 5745442 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 5745383 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||||||||| ||||||| |||| | ||||| || | ||| || Sbjct 5745382 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACC 5745323 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| |||||||| || || || || ||||| |||||||| Sbjct 5745322 TCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||||| || || || || || ||||| || || || |||||||||| | Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | || || || || || || | ||| || || || || || Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| ||| ||| | || | ||||| || | |||||| Sbjct 5746522 ATACCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACC 5746463 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || || || || ||||| |||||||| Sbjct 5746462 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 >seq1114 Length=8361563 Score = 141 bits (156), Expect = 7e-29 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 101237 ACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 ||||| ||||||| | | || || || ||||| || ||||| || || || ||||| Sbjct 2710527 ACATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAG 2710468 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 |||| | || | |||| ||||| || || || || || ||||| | || ||||| Sbjct 2710467 TCGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCT 2710408 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 || |||||||| ||||| ||||||||||| ||||||| |||| | ||||||||| | | Sbjct 2710407 GGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCT 2710348 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || || || | || | ||||| || || | |||||||| || |||||||| |||| Sbjct 2710347 TCAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATTGTTA 2710290 >seq1358 Length=322254 Score = 136 bits (150), Expect = 3e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || ||||||||||| | |||||| ||||| || ||| ||||||||| ||||| ||||| Sbjct 197 TTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCA 138 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| || || |||||||| ||||| |||||||| | | |||||| || || Sbjct 137 GATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGA 78 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || ||||| |||||||| || || ||||||| | || | ||| ||||| | ||| Sbjct 77 GGGATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCT 18 Query 101420 ACTTCAAGAGTGA 101432 ||||| | ||||| Sbjct 17 ACTTCCAAAGTGA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251489229204