Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3133 150 1e-31 seq5346 125 5e-24 seq2115 125 5e-24 seq2310 109 4e-19 seq1358 105 5e-18 seq2352 89.7 4e-13 >seq3133 Length=7630298 Score = 150 bits (166), Expect = 1e-31 Identities = 454/696 (65%), Gaps = 9/696 (1%) Strand=Plus/Plus Query 27762 TACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACG 27821 |||| || || |||||||| ||| | ||||||| ||| | || |||||||| || || | Sbjct 1021672 TACCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATG 1021731 Query 27822 GTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAAAGTCATG 27879 | |||||||| || | || | ||| || | ||| | | || ||| ||||| Sbjct 1021732 GCATCAACGACAGTTTGAAGGAAATCG--AAGGCAGTTTCCAAGCTCTTCAACGATCATG 1021789 Query 27880 CTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACC 27939 | ||| | || || | || || |||||| |||| || || || || || Sbjct 1021790 CAGCGGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCC 1021849 Query 27940 GCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGC 27999 ||||||||| | | ||||| ||||| ||||| || |||||||| ||| ||||| | Sbjct 1021850 ACAAAAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTC 1021909 Query 28000 CATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAG 28059 | |||| | | || |||| || || || || || ||||| |||||||| Sbjct 1021910 TCTTAAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGC 1021969 Query 28060 CGATCCATTCTTTTTTATGCAC-GACCCGGCCAAGCGTGCCGTGTTTGTAGAGTCTGTGC 28118 ||||| ||||| || | ||| ||| | ||| | | || || || |||||| Sbjct 1021970 AGATCCCTTCTTCTTCTT-CACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGA 1022028 Query 28119 GCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGG 28178 || || || || || ||||||||||| ||||| || ||| | || ||||| || || | Sbjct 1022029 AAGATTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTG 1022088 Query 28179 GTGGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGTACACCG 28238 | || |||||||| || || | | || | || || |||| | | ||| | Sbjct 1022089 GCGGTAAGGGAGCTAATCCAGACCTTGGCAGTCC---CAAGGACGGAGATGTTTACGTTG 1022145 Query 28239 CGCTGTTGCGCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGATCGCGTCT 28298 | || ||| | | ||| || |||| | | ||| | | || | | Sbjct 1022146 AATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCCGAAGAGACCGGTAAGAAAT 1022205 Query 28299 ACCAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAACTACGCTT 28358 || | || ||| | |||||||| || || ||||| || ||||| ||| | ||| | Sbjct 1022206 ACGAGCTGACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCGATTACAGTG 1022265 Query 28359 CGGCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGCGCCTGGT 28418 ||| || || | |||||||||| ||| ||||||||||||| || | |||||||||| Sbjct 1022266 AGGCTCAGAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAGGCGCCTGGT 1022325 Query 28419 CCAACACCGACGTGGGCCATCAGACACCGCTTTACG 28454 | ||| | | || |||||||| |||||||||| Sbjct 1022326 CTAACGATACCCTCGGTCATCAGACTCCGCTTTACG 1022361 Score = 150 bits (166), Expect = 1e-31 Identities = 392/600 (65%), Gaps = 57/600 (10%) Strand=Plus/Plus Query 7531 CGTGAAGAGGCTCGG-TTAAGCACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCA 7589 || ||||||| ||| ||||| || ||| | || ||||||||| || || ||| | Sbjct 2611331 CGCGAAGAGGAGCGGCTTAAG-ACGTTCGACAAGTGGCCCGTGGACTTCCTGTCGCCCGA 2611389 Query 7590 --AACTATGGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCG 7647 | ||| || |||||||| || || || | || || | |||||||| || ||||| Sbjct 2611390 GCAGCTA--GCACGCAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCC 2611447 Query 7648 TTTTGTAAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGG 7707 || |||||||| ||||||||||| ||||| || || ||||| || | ||||||||| | | Sbjct 2611448 TTCTGTAAAGTCGAAATCATGCGCTGGGTGGAGGGCGACGACCCCGCGAAGGACCACCAG 2611507 Query 7708 AAGTGGGCACCGCAGTGTCCGTTTCTG----------------------------CGTTC 7739 ||||| ||||| || || || ||| || || Sbjct 2611508 CGCTGGGCCCCGCAATGCCCCTTCCTGAGGCGGCACGCCACCGCCGGCAACGTGCCGCTC 2611567 Query 7740 GTTGACC-----GTCGGCGGGCGGGACGAGGTTGG--TTCGGGCGCGGTGCA----CACC 7788 | || | || ||| || |||||| || | || || | | || ||| Sbjct 2611568 GAGAGCCCCAGCGCCGCCGGTCGCGACGAGTGCGGCGTGCGCGCCCCGCCCAGCGCCACG 2611627 Query 7789 CCCG-------GCCCAGCCA-----ACCCTAGGTACGCGTTGGAGCAAGTGCGTCTGCTC 7836 |||| |||| ||| ||||| | ||||| | ||| | ||| || | | Sbjct 2611628 CCCGTGCGTATGCCCGGCCCCGTGCACCCTCGCTACGCCTCCGAGGCGGCGCGCCTCCGC 2611687 Query 7837 ACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGA 7896 || ||||| ||||||||| | || ||||||||| || |||| || || || || Sbjct 2611688 ACCTTCAAAGACTGGCCGCGCTGCATGCGGCAGAAACCCGAGGAGCTGGCGGAGGCCGGC 2611747 Query 7897 TTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAA 7956 || | |||||| |||| ||| || | || || || |||||||| ||||| || ||||| Sbjct 2611748 TTCTTCTACACCGGCCACGGGGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAG 2611807 Query 7957 GATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCA 8016 || |||||| | |||| | ||||||||||| |||||||||||||| || ||||| Sbjct 2611808 GACTGGGAGAACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCT 2611867 Query 8017 TATGTCAAACTAGTCAAAGGGGAGGAATATGTTCAGAAGGTAATTACTGAAGCGTGCGCC 8076 || || | || || ||||| || || || || || || || | || || |||||| Sbjct 2611868 TACGTTCAGCTGGTGAAAGGCCGCGACTACGTACAAAAAGTGATGTCGGAGGCCTGCGCC 2611927 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8170 CGTAACGTGTGCTTTGTTCCGTGCGGACATGTGGTGGCATGCGCCAAGTGCGCTTTAACC 8229 || ||||||||||| || |||||||| || |||||||| |||||||||||||| | | Sbjct 2612057 CGCAACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGCGCGCTGTCG 2612116 Query 8230 ACGAACACGTGCCCAATGTGTAGGCAGAAGTATATAAACGCTGTACGTGTTTACTATTCT 8289 ||| ||| |||||| ||||| ||| || || | ||||| || || | |||| || Sbjct 2612117 ACGGACAAGTGCCCCATGTGCCGGCGGACGTTCACGAACGCGGTGCGGCTGTACTTCTCG 2612176 Query 8290 TGA 8292 ||| Sbjct 2612177 TGA 2612179 >seq5346 Length=541963 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || ||||||||||| || || |||||||||||||| ||||| |||| | | | || ||| Sbjct 231448 AAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCT 231389 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| || ||||| |||||||| |||| |||||| || | || | || || || || Sbjct 231388 TCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCT 231329 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||| ||||||| | | || || || | || || |||| || || || Sbjct 231328 TGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTC 231269 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||||||||||||||| Sbjct 231268 TTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || ||||||||||| || || |||||||||||||| ||||| |||| | | | || ||| Sbjct 360796 AAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCT 360855 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| || ||||| |||||||| |||| |||||| || | || | || || || || Sbjct 360856 TCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCT 360915 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||| ||||||| | | || || || | || || |||| || || || Sbjct 360916 TGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTC 360975 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||||||||||||||| Sbjct 360976 TTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq2310 Length=6428792 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || | || | |||||| ||||| || || ||||| |||||||| || || Sbjct 5745503 GCCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGA 5745444 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | ||||||||| ||||| || || || || ||||| | ||| Sbjct 5745443 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 5745384 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| |||||||| ||| || ||||||| | | | || || | || || Sbjct 5745383 AATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAAC 5745324 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || ||||| || || |||||||||||||| Sbjct 5745323 CTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || || || || ||||| ||||| | | || | || ||| Sbjct 5744800 ACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCTTCC 5744741 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || |||||||| |||| || ||| || || | ||| | |||||| ||||| | Sbjct 5744740 AGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGA 5744681 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 5744680 ATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 5744621 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 |||||||| || || ||||||||||||||| ||| Sbjct 5744620 CCCGTCAAGGTCTTCACAAAAATCTGCATCTTGT 5744587 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || ||| || || ||||| ||||||||||| || | || Sbjct 5745721 AGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCAGAGAGTGTACGT 5745662 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| ||||||||||| || || || || || || | ||| | || ||| Sbjct 5745661 CCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCC 5745602 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| ||| | | | ||||| | || ||||||| || Sbjct 5745601 TTATCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAACCTCCAATGTG 5745542 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || |||||||| ||||| Sbjct 5745541 ATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCAT 5745504 >seq1358 Length=322254 Score = 105 bits (116), Expect = 5e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || ||||||||||| || || |||||||||||||| |||||||||| | | | || ||| Sbjct 179 AAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAGATAAAGTCCTATTGTCT 120 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| || ||||| |||||||| |||| |||||| || | || | || ||||| || Sbjct 119 TCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCCTTATCT 60 Query 48675 CTAATCTTTTGTTTTACA 48692 ||||| ||||||| Sbjct 59 TGGATCTTGGCTTTTACA 42 >seq2352 Length=6838751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 9073 AAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTG 9132 |||||||||||||| || ||||| ||||| || || || || || || |||| ||| Sbjct 3793067 AAGATTTGTTCACAGATCAATTGTGCAATTCTATCTCCTTTTTTAACATCAAAATCTTGA 3793126 Query 9133 TCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCA 9192 || ||||||||||| || || ||||| || ||||| | ||||| ||||| || || || Sbjct 3793127 TCAGAATGATTGAAGAGTACTACTCCAACATTACCACGATAATCTTCATCAATGACGCCG 3793186 Query 9193 GC 9194 || Sbjct 3793187 GC 3793188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911731003756