Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3133 210 2e-49 seq5346 134 1e-26 seq2115 134 1e-26 seq1358 107 2e-18 seq1114 98.7 8e-16 seq2310 87.8 2e-12 >seq3133 Length=7630298 Score = 210 bits (232), Expect = 2e-49 Identities = 587/895 (66%), Gaps = 17/895 (2%) Strand=Plus/Minus Query 106111 TAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGTTG 106170 |||||| || || ||||| ||||| |||||||| || || || || | || || || Sbjct 1022497 TAATTGTGGACACCGGTCCAGCCGCGTCCGTACATAGCTACACCCACCACAATCTTCTTA 1022438 Query 106171 GGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTTCG 106230 || | ||| |||| ||||| | || | | | |||||||| |||| | Sbjct 1022437 GGGTTGACACCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTTGTGTAAGTTTCCTTA 1022378 Query 106231 GAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAG---ATCTGTGTTCGACCAC 106287 | |||||| || || || | || || |||| || || ||| ||| ||||| Sbjct 1022377 GGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCGAGGGTATC---GTTAGACCAG 1022321 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || ||||| || ||||||||||| ||||| || | ||||| || || || || || | Sbjct 1022320 GCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCCATGTACTTCTGAGCCTCACTG 1022261 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 || | || || ||| || || | || || || ||||| ||| | ||||| Sbjct 1022260 TAATCGACAACTTGAATCTTATCCCATCCAGCACTAATAGCAGAGGTCAGCTCGTATTTC 1022201 Query 106408 TTGCCCGTTTGCAGTTCTAAT---TCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACG 106464 || || || | ||| | |||| | ||| | ||||| || | || | | Sbjct 1022200 TTACCGGTCTC---TTCGGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCA 1022144 Query 106465 ACATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCT 106524 || || || |||| | | | ||| | ||||| || || || ||||| Sbjct 1022143 ACGTAAACATCTCCGTCC---TTGGGACTGCCAAGGTCTGGATTAGCTCCCTTACCGCCA 1022087 Query 106525 GGAAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTT 106584 || ||||||||||| ||||| || || || || || ||||| || | || || || Sbjct 1022086 GGGAATTCCCAATCGATATCTACACCGTCGAAGAACTTCCATGTCTGAAGGAAATCTTTC 1022027 Query 106585 ACAGAATTTACAAACACGTTTCTTTTTTCAACGTCA-TGCATAAAATAGAAGGGGTCTGA 106643 ||||||| || || | ||| || || ||| || | || | ||||||| |||| Sbjct 1022026 ACAGAATCCACGAAGCGATCTCTCTTCTCTTTGTCTGTGAAGAAGA-AGAAGGGATCTGC 1021968 Query 106644 TAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGC 106703 || ||||| || || || || || || | ||| | | || | || |||| | Sbjct 1021967 AAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGTCAGGCCTGGCTTGTTTAAGAGA 1021908 Query 106704 CATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGG 106763 ||||| ||| |||||||| || ||||| ||||| ||||| | || | || ||||| || Sbjct 1021907 CATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCCAGGAAGAAAGACCCTTTTGTGG 1021848 Query 106764 CTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCA 106823 |||||| | |||||||| ||||||||||| |||||||| ||||| |||| || |||| Sbjct 1021847 CTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTTTGAAATCTTCGCGGCCGCTGCA 1021788 Query 106824 TGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATC 106883 |||| ||| | || || ||||| || ||| || || ||||| || ||||| Sbjct 1021787 TGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATC 1021728 Query 106884 ACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTT 106943 || ||||| || ||||||||||||||||| | ||| | | ||| || | || || Sbjct 1021727 GCCTCCGCAAATTGGAATAAAACCGTACAAAAGATGAGTCAGATTAGGAATTGGTACACG 1021668 Query 106944 ATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACA 106998 ||| || || || || | || || |||||||| || || ||||| ||||| Sbjct 1021667 ATCAACAGGGAATTTTCTTGGGTAGACACCCCATTCAACGAAGTACGCTCCGACA 1021613 >seq5346 Length=541963 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| |||||||| || || || || || ||| |||||||| Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| || ||||| ||| | || ||| ||| Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| ||||| || |||||||||||||| || ||| | |||||||||| Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||| ||| || || |||| ||||||||| ||||||| Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| |||||||| || || || || || ||| |||||||| Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| || ||||| ||| | || ||| ||| Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| ||||| || |||||||||||||| || ||| | |||||||||| Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||| ||| || || |||| ||||||||| ||||||| Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 360781 >seq1358 Length=322254 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||| |||||||||||||| ||||| || |||||||||||||| || ||| | | || Sbjct 81 AGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCTGA 140 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||| |||||||||||| ||| || || |||| ||||||||| ||||||| Sbjct 141 TTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 194 >seq1114 Length=8361563 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 28546 GTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGG 28605 || ||| |||||| || || |||||||| | |||||||||||||| || || | Sbjct 2710287 GTTTAACAATGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTTG 2710346 Query 28606 AACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCC 28664 || | || || || | | || | || || |||| || ||||||||||| | || Sbjct 2710347 AAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCA 2710405 Query 28665 GTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 28724 |||||| || ||| | ||||| || |||||||| ||||||||| || || || Sbjct 2710406 CCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCC 2710465 Query 28725 GATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||| || || ||||| || || ||| |||| || || | |||||||| Sbjct 2710466 GACTACAACATCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 2710521 >seq2310 Length=6428792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || ||||| || || || ||||| || ||||| ||| || ||| ||| Sbjct 5744589 AAGATGCAGATTTTTGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCT 5744648 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | ||| || || ||||||||||| | ||| ||| Sbjct 5744649 TCGGACACAATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGAC 5744708 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || |||||| | |||||||| |||||||| |||||||| || || | || || Sbjct 5744709 CAGCAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTAC 5744768 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||||| || || ||||| || || ||| ||||| Sbjct 5744769 AACATCCAGAAGGAATCCACACTTCACTTGGTA 5744801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425375911291788