Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1114 190 2e-43 seq2352 91.5 2e-13 seq1673 91.5 2e-13 seq1390 87.8 2e-12 >seq1114 Length=8361563 Score = 190 bits (210), Expect = 2e-43 Identities = 483/723 (67%), Gaps = 25/723 (3%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||||| || || | || |||| ||| || || |||||||| ||||| ||||| ||| Sbjct 3014736 TGGAAAGCAATAATAGAAGCACAAGTGGAAACAGGCACACCATACATGCTGTACAAAGAT 3014677 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | ||||||| || ||||| ||||| ||| | || ||||| || || ||| | ||| Sbjct 3014676 TCATGTAACAGAAAAAGTAATCAAAAAAATCTTGGCACAATTAAATGCAGTAATTTGTGC 3014617 Query 75998 ACGGAAATTTTAGAGTACACAGATAAG--GATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 || |||||| | |||||||| | || ||||| || ||||| ||||| || |||| Sbjct 3014616 ACAGAAATTGTTGAGTACACT--TCAGCAGATGAAGTTGCAGTTTGTAATTTAGCTTCAA 3014559 Query 76056 TCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 | || | | || |||||||||||| | || | | | | ||| | | | Sbjct 3014558 TTGCATTAAACAGGTTTGTCAATGAAGA---TAAAACATACAACTTTACAAAGTTGAAAG 3014502 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 || | ||||||| | || |||| || || | | ||||| |||||||| || | Sbjct 3014501 AAGTTACAAAGACGATCACACAAAACCTTAATAAAATTATTGATGTTAATTTTTACCCAG 3014442 Query 76176 TTGAGACTG-CGCGA--AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 | | ||| || | || ||||| ||||||||||||||||| ||| | || || |||| Sbjct 3014441 T---GCCTGAAGCAAAGAACTCTAACATGCGACACAGACCTATAGGTATTGGAGTGCAAG 3014385 Query 76233 GTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGA 76292 || | || ||| |||| | | | ||| ||| ||| || ||||| | | Sbjct 3014384 GTTTAGCTGATACATTTGTACTATTGCGCATTCCATATGAAAGTGAAGAAGCAATTAAAC 3014325 Query 76293 TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGG 76352 | || | ||||| ||||| || ||| ||| | | | ||||| ||||||||| ||| Sbjct 3014324 TTAACCAACAAATCTTCGAAACTATATATTACGGAGCATTAGAGGCCAGTTGTGAACTGG 3014265 Query 76353 CTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTC 76412 | || | || ||| |||| ||| || ||| | |||||| | | | Sbjct 3014264 CGCAAAAAGAGGGAGTTTATAGTACATATGAAGGAAGTCCAACAAGCCAAGGCATCTTAC 3014205 Query 76413 AGTTTGATATGTGGGAAGGTGAAAC-CAAGCTCAACTA--CGACTGGGATGTTCTCAAGG 76469 | | ||| |||||||| | |||| | | || | ||| |||||| |||| | || | Sbjct 3014204 AATATGACATGTGGGA---TAAAACTCCAACTGATCTATGGGACTGGTCTGTTTTAAAAG 3014148 Query 76470 AACGCAT---CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAG 76526 || || ||| | | ||| ||||| ||| ||||| | || |||||||| |||| Sbjct 3014147 AAAAAATTGCCAA--ACATGGG-CTTCGCAACTCACTTTTATTAGCTCCAATGCCTACAG 3014091 Query 76527 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCT 76586 | || || ||||||||||| || |||||||| | ||||||||||| |||| ||||||| | Sbjct 3014090 CATCTACAGCACAAATCTTAGGAAATAATGAGTCCTTTGAACCATTCACATCAAACATTT 3014031 Query 76587 ACC 76589 ||| Sbjct 3014030 ACC 3014028 >seq2352 Length=6838751 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||||||||| | || || ||| | || ||||| | ||||| |||||| Sbjct 5358375 CCTGGTACGGGAAAGACGTTACTGGCTAAAGCAACAGCTGGTGAGGCTAATGTTCCATTC 5358316 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | ||| |||| || | ||| |||| |||||||||||||| ||| | || || Sbjct 5358315 ATTACGGTG-TCTGGTTCAGAATTTTTGGAAATGTTTGTTGGTGTTGGTCCTTCTAGAGT 5358257 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | ||| || || || || || || || ||| | || |||||||| || Sbjct 5358256 TCGGGATATGTTTTCTATGGCACGTAAACATGCTCCTTGCATTCTTTTTATTGATGAAAT 5358197 Query 175494 TGATGCGGTGGG 175505 ||||||||| || Sbjct 5358196 TGATGCGGTCGG 5358185 >seq1673 Length=160240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTC 65065 |||||| |||| | |||||||| | ||||| |||||||| || || | ||| ||| Sbjct 45208 TACCATCTATTAAAAAGAAGGCTGATTGGGCTTTGAAATGGATTAAAGATAAAAAATCTA 45149 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 || | | | || | || | || ||||| ||||| || || || ||||| || Sbjct 45148 -CTTTTGCTACCAGAG--TTATCGCATTTGCTTGTGTTGAAGGAATTTTCTTTAGTGGAG 45092 Query 65126 CATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 |||| ||| | || | ||||| ||||| | ||||||||||| || | | || ||| Sbjct 45091 CATT-TGCTTCGATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCA 45033 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||||||||||| ||||||||| ||||| || |||||||| Sbjct 45032 AATGAACTTATTAGCCGAGATGAAGGTCTGCATTGCGAGTTTGC 44989 >seq1390 Length=76047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/212 (71%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTC 65065 |||||| |||| | |||||||| | |||||| |||||||| | |||| ||| ||| Sbjct 54578 TACCATCTATTAAAAAGAAGGCTGATTGGGCATTGAAATGGATAAAAGACAAAAAATCTA 54637 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 || | | | || | || | || ||||| ||||| || || || ||||| || Sbjct 54638 -CTTTTGCTACCAGAG--TTATCGCATTTGCTTGTGTCGAAGGAATTTTCTTTAGTGGAG 54694 Query 65126 CATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 |||| ||| | || | ||||| ||||| | ||||||||||| || | | || ||| Sbjct 54695 CATT-TGCTTCGATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCA 54753 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 |||||||| ||| ||||||||| ||||| || Sbjct 54754 AATGAACTCATTAGCCGAGATGAAGGTCTGCA 54785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596528048927360