Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5346 174 3e-38 seq2115 174 3e-38 seq2524 86.0 1e-11 >seq5346 Length=541963 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| ||||| |||| | |||| ||| | |||| ||||| ||||||||| |||| Sbjct 231465 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 231406 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 |||| || ||| || || |||||||| || ||||| || | ||||||||| || |||| Sbjct 231405 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 231346 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | ||||||||||||||||| || |||| ||||| ||| ||||||||| |||| || | Sbjct 231345 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 231286 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| | ||| || || || ||||||| || |||||||| || ||||| Sbjct 231285 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| ||||| |||| | |||| ||| | |||| ||||| ||||||||| |||| Sbjct 360779 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 360838 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 |||| || ||| || || |||||||| || ||||| || | ||||||||| || |||| Sbjct 360839 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 360898 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | ||||||||||||||||| || |||| ||||| ||| ||||||||| |||| || | Sbjct 360899 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 360958 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| | ||| || || || ||||||| || |||||||| || ||||| Sbjct 360959 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq2524 Length=6099401 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 159886 TATCCGATGAAGTAATTCATCTATTATTTTCTGCAAATAGATGGGAAAAATATAATGAAA 159945 ||||||||||| |||||| |||||||| || |||||| | ||||| ||| | Sbjct 4691246 TATCCGATGAAACAATTCACCTATTATTCTCCGCAAATCGTTGGGAGAAAGCTCGCAGTT 4691305 Query 159946 TAATTAAAACGTTAGAAATGGGTATTACTATAATTATGGATAGATATTGCTATTCCGGAG 160005 |||| |||| ||| ||| ||||| | ||| ||| |||| ||||||||||| || || | Sbjct 4691306 TAATAAAAAAGTTGGAAGAAGGTATAAGTATTATTGTGGACAGATATTGCTACTCAGGTG 4691365 Query 160006 TAGCTTATTCAGCATCTAAAGGTATTG 160032 | || | | | || | ||||||| || Sbjct 4691366 TGGCATTTACTGCTGCAAAAGGTAATG 4691392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899591739071040