Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1673 197 3e-45 seq1390 185 2e-41 seq5346 165 2e-35 seq2115 165 2e-35 seq1358 138 2e-27 seq1114 129 1e-24 seq2310 127 4e-24 seq4120 120 6e-22 >seq1673 Length=160240 Score = 197 bits (218), Expect = 3e-45 Identities = 535/814 (66%), Gaps = 22/814 (3%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AATA 49650 ||||||||| || ||||| || || ||| || ||| || ||| ||| |||| Sbjct 44763 CATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTC-CAAGGTTTATCAATA 44821 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT- 49709 |||| |||||||||||||||| ||| | |||| | || |||||||| || ||||| Sbjct 44822 ATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCC-AATAAGA 44880 Query 49710 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 49769 |||| |||||| ||| | |||||||| ||| |||| ||| || | || || Sbjct 44881 TTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT- 44939 Query 49770 ataatt-atattattttttgataatttatatttaatatgattcgcatatattaaACATGC 49828 || || || |||| |||||| ||| || | | || || ||||| || Sbjct 44940 ATCCTTGATCTTATCGC------ATTTATTGATAAGATAACT---ATTTAACAAACAAGC 44990 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||| || ||| | ||| || || | |||| |||||| ||| | || || || Sbjct 44991 AAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGG 45050 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| | ||||| || || | ||| || || || ||||| | | |||||| || || Sbjct 45051 CATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCC 45110 Query 49949 CTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCA 50008 || ||||| |||||||| || | ||| | |||| | |||| | |||| ||||| Sbjct 45111 TTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCA 45170 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 || | ||||||||| || || ||||| ||||| ||||| | | |||||| |||| | Sbjct 45171 TTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAG 45230 Query 50069 TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGA 50128 | ||||||||| | || | |||||||||||||||||| Sbjct 45231 ATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGA 45290 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAA-TACTGAA 50187 ||| | | ||| ||| ||| || ||| |||||| | |||| ||| || | ||| Sbjct 45291 ATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGAC 45350 Query 50188 CT--TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 | |||||||| | |||||| | |||| | ||||||||||||||| || ||||| Sbjct 45351 TTCCTCGGAAAAC---CTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAA 45407 Query 50246 GAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTC 50305 ||||| | || | | || ||| | | |||||| | ||||| | |||| | Sbjct 45408 AAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAATTCCAATCATA 45467 Query 50306 AAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATA 50365 | |||| ||| | ||| |||||||| |||||||| || | ||| || ||| || Sbjct 45468 TAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTA 45527 Query 50366 CATTTGATATATATCAAAATGTTCAAT-GGGAAA 50398 ||| | | ||||| || || ||| |||||| Sbjct 45528 CATCTTCCAGATATCGTGATATTTAATAGGGAAA 45561 >seq1390 Length=76047 Score = 185 bits (204), Expect = 2e-41 Identities = 497/758 (66%), Gaps = 20/758 (3%) Strand=Plus/Minus Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 |||||||| |||||||||||||||| ||| | |||| | || |||||||| || ||| Sbjct 54968 AATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCC-AAT 54910 Query 49707 AAT-TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 49765 || |||| ||||| ||| | |||||||| ||| |||| ||| || | || Sbjct 54909 AAGATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAAC 54850 Query 49766 tatcataatt-atattattttttgataatttatatttaatatgattcgcatatattaaAC 49824 || || || || |||| |||||| ||| || | | || || |||| Sbjct 54849 AAT-ATCCTTGATCTTATCGC------ATTTATTGATAAGATAACT---ATTTAACAAAC 54800 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | ||||| || ||| | ||| || || | || | |||||| ||| | || | Sbjct 54799 AAGCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAAC 54740 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 | ||||| | ||||| || || | ||| || || || ||||| | | |||||| | Sbjct 54739 CAGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAA 54680 Query 49945 TACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA 50004 | || |||||||| |||||||| || | ||| | |||| | |||| | ||| || Sbjct 54679 TTCCTTCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTA 54620 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| || | |||||||| || || ||||| ||||| ||||| | | |||||| |||| Sbjct 54619 TCCATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAA 54560 Query 50065 ATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 | | ||||||||| | || | |||||||||||||| Sbjct 54559 GAAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTT 54500 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAA-TAC 50183 ||||||| | | ||| ||| ||| || ||| |||||| | |||| ||| || | Sbjct 54499 CAGAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGG 54440 Query 50184 TGAACT--TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 50241 ||| | |||||||| | |||||| | |||| | ||||||||||||||| || | Sbjct 54439 TGACTTCCTCGGAAAAC---CTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAG 54383 Query 50242 CGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 50301 |||| ||||| | || | | || ||| | | |||||| | ||||| | |||| Sbjct 54382 CGAAAAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAGTTCCAAT 54323 Query 50302 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 | | |||| ||| | ||| |||||||| |||||||| || | ||| || || Sbjct 54322 CATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTT 54263 Query 50362 TATACATTTGATATATATCAAAATGTTCAAT-GGGAAA 50398 | ||||| | | ||||| || || ||| |||||| Sbjct 54262 TGTACATCTTCCAGATATCGTGATATTTAATAGGGAAA 54225 >seq5346 Length=541963 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| ||||| | | ||| || ||||||| ||| ||||| ||||||||||| | Sbjct 231465 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 231406 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || | | || |||||||||||||||||||| || | ||||||||| || || | Sbjct 231405 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 231346 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||||||||||||| || || ||||||||| |||| ||| || | ||||| Sbjct 231345 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 231286 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| | ||| || || || || |||||||| || | ||| |||||||| Sbjct 231285 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| ||||| | | ||| || ||||||| ||| ||||| ||||||||||| | Sbjct 360779 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 360838 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || | | || |||||||||||||||||||| || | ||||||||| || || | Sbjct 360839 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 360898 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||||||||||||| || || ||||||||| |||| ||| || | ||||| Sbjct 360899 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 360958 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| | ||| || || || || |||||||| || | ||| |||||||| Sbjct 360959 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1358 Length=322254 Score = 138 bits (152), Expect = 2e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| ||||| | | ||| || ||||||| ||| ||||| ||||||||||||| Sbjct 196 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAG 137 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || | | || |||||||||||||||||||| || | ||||||||| || || | Sbjct 136 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 77 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| |||||||| || || ||||||||| |||| ||| || | ||||| Sbjct 76 GGATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 17 Query 192488 CTTCTAGAGTAATGGT 192503 |||| | ||| || || Sbjct 16 CTTCCAAAGTGATTGT 1 >seq1114 Length=8361563 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192302 TAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTAT 192361 ||| | |||| |||| ||| | || || || || | || | || || ||| || | Sbjct 2710529 TAACATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGT 2710470 Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421 | || || ||||| ||| |||| ||||| ||||| || || ||||| ||||| || |||| Sbjct 2710469 AGTCGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGAT 2710410 Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481 | ||||| || || ||||| ||||| ||||| ||||||||| |||| || || | Sbjct 2710409 CTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGG 2710350 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| || |||| || ||||||||||| || | ||||| | || ||||||||| Sbjct 2710349 CTTCAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 >seq2310 Length=6428792 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| || || | || | |||||| ||| || || ||| Sbjct 5746873 ATACCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCA 5746814 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| || | ||||| || || ||||| |||||||| || || || Sbjct 5746813 GAGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGG 5746754 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| || | || || | ||| Sbjct 5746753 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCG 5746694 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||||||||| ||||| || || || | ||| |||||||| Sbjct 5746693 ACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| || || | || | |||||| ||| || || ||| Sbjct 5746189 ATACCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCA 5746130 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| || | ||||| || || ||||| |||||||| || || || Sbjct 5746129 GAGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGG 5746070 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || || | ||| Sbjct 5746069 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCG 5746010 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||||||||| ||||| || || || | ||| |||||||| Sbjct 5746009 ACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| |||||||| || || || | || | |||||| |||||||||||| Sbjct 5746417 ATACCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCG 5746358 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | ||||| || || ||||| | | || || || || Sbjct 5746357 GAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGG 5746298 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||| ||||| || | || || | ||| Sbjct 5746297 GGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCC 5746238 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || || ||||| || |||| ||| |||||||| Sbjct 5746237 ACTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 >seq4120 Length=16292344 Score = 120 bits (132), Expect = 6e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 50112 AAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT 50171 || || ||||| ||||| |||||| |||||||| ||||| ||| |||||| ||| Sbjct 7436429 AAGGAGTACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTT 7436488 Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 ||||| | |||||||| | ||||| || |||| ||||||| || |||||| Sbjct 7436489 GCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACTAGATTCTCATTAACTATACCA 7436548 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 ||||| || || || ||||| ||||| | ||||||||| || | ||| ||| |||||| Sbjct 7436549 TCAGAAGCAGCAAAAAATGCCAAAACATGTTTAATAAAGTGCCTCTCACAATCCTTTAAA 7436608 Query 50292 TTTTCCCAA 50300 |||||||| Sbjct 7436609 CTTTCCCAA 7436617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984409716742200