Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1673 187 5e-42 seq5346 183 5e-41 seq2115 183 5e-41 seq1358 156 8e-33 seq1390 154 3e-32 seq4120 129 1e-24 seq1114 109 1e-18 seq2310 100 5e-16 >seq1673 Length=160240 Score = 187 bits (206), Expect = 5e-42 Identities = 567/877 (65%), Gaps = 22/877 (3%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || | ||| ||||||| ||||| ||||||||||| || | | ||| || Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-A 38949 | ||||||||| || ||||| || || ||| || ||| || ||| ||| | Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCT-CCAAGGTTTATCA 44818 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 ||||||| ||||| |||||||||| ||| | |||| | || |||||||| |||||| Sbjct 44819 ATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCAT-TCCAATA 44877 Query 39010 A-TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | |||| |||||| ||| | |||||||| ||| |||| ||| || | || Sbjct 44878 AGATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACG 44937 Query 39069 atcataatt-atattattttttgataatttatatttaatatgattcgcatataGTAAACA 39127 || || || || |||| ||||| || ||| ||| || || ||||| Sbjct 44938 AT-ATCCTTGATCTTAT------CGCATTTA---TTGATAAGATAACTATTTAACAAACA 44987 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||| || ||| | |||||| || | |||| |||||| ||| | || || Sbjct 44988 AGCAAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACC 45047 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||| | ||||| || || | ||| || || || ||||| | | |||||| || Sbjct 45048 AGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAAT 45107 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || ||||| |||||||| || | ||| | |||| | |||| | |||| ||| Sbjct 45108 TCCTTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAAT 45167 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || | |||||||| || || ||||| ||||| ||||| | | |||||| |||| Sbjct 45168 CCATTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAG 45227 Query 39368 TAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTC 39427 | | || |||||||||||| Sbjct 45228 AAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTC 45287 Query 39428 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT-GAATACT 39486 |||||| | | ||| ||| ||| || ||| |||||| |||| ||| ||| | Sbjct 45288 AGAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGT 45347 Query 39487 GA--ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || | |||||| || | |||||| | |||| | ||||||||||||||| || || Sbjct 45348 GACTTCCTCGGAA---AACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGC 45404 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 ||| ||||| | || || | || ||| | | |||||| | ||||| | |||| Sbjct 45405 GAAAAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAATTCCAATC 45464 Query 39605 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTT 39664 | | |||| ||| | ||| |||||||| ||||||||||| | ||| || ||| Sbjct 45465 ATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTT 45524 Query 39665 ATACATTTGATATATATCAAAATGTTCAAT-GGGAAA 39700 ||||| | | ||||| || || ||| |||||| Sbjct 45525 GTACATCTTCCAGATATCGTGATATTTAATAGGGAAA 45561 >seq5346 Length=541963 Score = 183 bits (202), Expect = 5e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| ||||| | || ||| || ||||||| ||| ||||| |||||||||||| | Sbjct 231465 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 231406 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||||| | | ||| |||||||||||||||||||| || | |||||||||||| || | Sbjct 231405 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 231346 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | ||||||||||||||||| || || ||||||||| |||||||| || | ||||| Sbjct 231345 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 231286 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| | ||| || || || || |||||||| || | || |||||||| Sbjct 231285 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 183 bits (202), Expect = 5e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| ||||| | || ||| || ||||||| ||| ||||| |||||||||||| | Sbjct 360779 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 360838 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||||| | | ||| |||||||||||||||||||| || | |||||||||||| || | Sbjct 360839 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 360898 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | ||||||||||||||||| || || ||||||||| |||||||| || | ||||| Sbjct 360899 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 360958 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| | ||| || || || || |||||||| || | || |||||||| Sbjct 360959 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1358 Length=322254 Score = 156 bits (172), Expect = 8e-33 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| ||||| | || ||| || ||||||| ||| ||||| |||||||||||| | Sbjct 196 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAG 137 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||||| | | ||| |||||||||||||||||||| || | |||||||||||| || | Sbjct 136 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 77 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | |||||||| |||||||| || || ||||||||| |||||||| || | ||||| Sbjct 76 GGATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 17 Query 172021 CTTCTAGAGTAATGGT 172036 |||| | ||| || || Sbjct 16 CTTCCAAAGTGATTGT 1 >seq1390 Length=76047 Score = 154 bits (170), Expect = 3e-32 Identities = 560/877 (64%), Gaps = 22/877 (3%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || | ||| ||||||| || || ||||||||||| || | | ||| || Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-A 38949 | ||| ||||| || ||||| || || ||| || ||| | ||| ||| | Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCCC-CAAGGTTTATCA 54968 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 ||||||| ||||| |||||||||| ||| | |||| | || |||||||| || |||| Sbjct 54967 ATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCC-AATA 54909 Query 39010 AT-TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | |||| ||||| ||| | |||||||| ||| |||| ||| || | || Sbjct 54908 AGATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACA 54849 Query 39069 atcataatt-atattattttttgataatttatatttaatatgattcgcatataGTAAACA 39127 || || || || |||| |||||| ||| || | | || || ||||| Sbjct 54848 AT-ATCCTTGATCTTATCGC------ATTTATTGATAAGATAACT---ATTTAACAAACA 54799 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||| || ||| | |||||| || | || | |||||| ||| | || || Sbjct 54798 AGCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACC 54739 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||| | ||||| || || | ||| || || || ||||| | | |||||| || Sbjct 54738 AGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAAT 54679 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || ||||| |||||||| || | ||| | |||| | |||| | ||| || Sbjct 54678 TCCTTCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTAT 54619 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || | |||||||| || || ||||| ||||| ||||| | | |||||| |||| Sbjct 54618 CCATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAG 54559 Query 39368 TAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTC 39427 | | || |||||||||||| Sbjct 54558 AAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTC 54499 Query 39428 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA-TACT 39486 |||||| | | ||| ||| ||| || ||| |||||| |||| ||| || | | Sbjct 54498 AGAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGT 54439 Query 39487 GAACT--TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || | |||||||| | |||||| | |||| | ||||||||||||||| || || Sbjct 54438 GACTTCCTCGGAAAAC---CTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGC 54382 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 ||| ||||| | || || | || ||| | | |||||| | ||||| | |||| Sbjct 54381 GAAAAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAGTTCCAATC 54322 Query 39605 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTT 39664 | | |||| ||| | ||| |||||||| ||||||||||| | ||| || ||| Sbjct 54321 ATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTT 54262 Query 39665 ATACATTTGATATATATCAAAATGTTCAAT-GGGAAA 39700 ||||| | | ||||| || || ||| |||||| Sbjct 54261 GTACATCTTCCAGATATCGTGATATTTAATAGGGAAA 54225 >seq4120 Length=16292344 Score = 129 bits (142), Expect = 1e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 || ||||| ||||| |||||| |||||||| ||||| ||| |||||| ||||||| Sbjct 7436432 GAGTACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCT 7436491 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | |||||||| | ||||| || |||| ||||||| || ||||||||| Sbjct 7436492 TCACCAATTTGAACTTCTTGTGAAAATCGCTCTACTAGATTCTCATTAACTATACCATCA 7436551 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 || || || || ||||| ||||||| ||||||||| || | ||| ||| |||||| || Sbjct 7436552 GAAGCAGCAAAAAATGCCAAAACATGTTTAATAAAGTGCCTCTCACAATCCTTTAAACTT 7436611 Query 39597 TCCCAA 39602 |||||| Sbjct 7436612 TCCCAA 7436617 >seq1114 Length=8361563 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || || | ||| | || ||||| ||||| || || || || ||||| Sbjct 2710476 ATGTTGTAGTCGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTT 2710417 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || ||||| || || ||||| ||||| ||||| ||||||||| ||||| Sbjct 2710416 TGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTG 2710357 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| || |||| || ||||||||||| || | ||||| | ||| |||||| Sbjct 2710356 TCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGC 2710297 Query 172068 ATT 172070 ||| Sbjct 2710296 ATT 2710294 >seq2310 Length=6428792 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || ||||| || || || | || | |||||| ||||||||||| Sbjct 5746417 ATACCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCG 5746358 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||||| || || || || | | || ||||| || Sbjct 5746357 GAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGG 5746298 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||| ||||| || || || || | ||| Sbjct 5746297 GGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCC 5746238 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || || ||||| || |||| || |||||||| Sbjct 5746237 ACTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | ||| || || | || | |||||| || || || || Sbjct 5746873 ATACCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCA 5746814 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | ||||| || || || || |||||||| ||||| || Sbjct 5746813 GAGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGG 5746754 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| || || || || | ||| Sbjct 5746753 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCG 5746694 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||||||||| ||||| || || || | || |||||||| Sbjct 5746693 ACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | ||| || || | || | |||||| || || || || Sbjct 5746189 ATACCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCA 5746130 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | ||||| || || || || |||||||| ||||| || Sbjct 5746129 GAGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGG 5746070 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || || | ||| Sbjct 5746069 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCG 5746010 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||||||||| ||||| || || || | || |||||||| Sbjct 5746009 ACTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905072957277600