Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1248 86.0 8e-12 seq1205 84.2 3e-11 >seq1248 Length=515940 Score = 86.0 bits (94), Expect = 8e-12 Identities = 259/399 (65%), Gaps = 16/399 (4%) Strand=Plus/Minus Query 165952 TAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACA 166011 ||| || || |||||| || ||| |||||||||| |||| ||||| ||||||||| Sbjct 55908 TAAAGTAGCACAATTAGTAGGTTATATTGCAGAACATACAGCTTATAGACATGGTGAAGT 55849 Query 166012 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | | | |||||| | || || |||||||||||||| | |||||||| Sbjct 55848 ATCACTTGCTTCTACTATAGTAGCTTTAGCTCAAGATTTTGTTGGATCTAATAATATT-- 55791 Query 166072 ATTACTTGAA--CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCT 166129 | || || || ||| |||||||||| ||| | ||| | ||||||||||||| | || Sbjct 55790 AATATTTTAATGCCTAATGGTCAATTCGGTTCTAGACTTATGGGAGGTAAAGATTGTTCT 55731 Query 166130 GCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAGAAGAA 166189 | | ||||||| ||| ||| ||||||| | | || ||| ||| Sbjct 55730 AGTGCTCGTTATATTTTTACTGAACTCTCTAAAATAACCAGAACAATTTTTCATGAAAGT 55671 Query 166190 GATGACCCTATTTTAAATTATACTGTTGAGG-----------GT-GAACCTATTCATTTT 166237 ||||| | | | | |||||| |||| | || ||||| ||| | Sbjct 55670 GATGATCTTGTACTTAATTATTTAATTGAAGAAGAAAAATCTGTAGAACCACAATATTAT 55611 Query 166238 ATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCA 166297 |||| | || ||| | | ||| | ||||||||| ||||||||| || || ||| Sbjct 55610 GTTCCTATTATTCCAATGTTATTAGTAAATGGTTCTGATGGTATTGGTACTGGTTGGAGT 55551 Query 166298 TGTTTTATACCTCAATATAATCCTTTAGAATTAATTGAT 166336 ||| ||| | |||||||||||||| | |||||| Sbjct 55550 ACAAATATTCCTAATTATAATCCTTTAGATCTTATTGAT 55512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 194157 AGAAGAAGGGTATGTGGATCGTATCACTGATAAT----ACAACAGATGGTTGTAGAATAG 194212 ||||||||| | ||||||| ||| ||||| | | | |||||||| || | | Sbjct 298049 AGAAGAAGGTTTTGTGGAT----TCAGTGATAGTTACGAATAAAGATGGTTATAAATTTA 297994 Query 194213 TTAAAGTTGTTATTGGTCAGTT-ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA 194271 |||||| || || ||| ||| || ||| |||| || ||||||||| ||| || Sbjct 297993 CTAAAGTAAAAATACGT-AGTGGACGAATCCCTCAAATGGGAGATAAATTTGCTTCTAGA 297935 Query 194272 ATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 194331 |||||||| || || ||| || | | |||||||||||||| ||||| || Sbjct 297934 CATGCTCAAAAGGGGACCATTGGGATTACACTCCCTCAAGAAGATATGCCCTTTACTTCT 297875 Query 194332 TCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCAT 194390 ||| || || || ||||||||||| ||||| || |||||| |||||||| || Sbjct 297874 GAAGGGATAGTCCCTGATATTATTATTAATCCTCATGCTATTCCTAGTAGAATGACAAT 297816 >seq1205 Length=221829 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 194157 AGAAGAAGGGTATGTGGATCGTATCACTGATAAT----ACAACAGATGGTTGTAGAATAG 194212 ||||||||| | ||||||| ||| ||||| | | | |||||||| || | | Sbjct 147517 AGAAGAAGGTTTTGTGGAT----TCAGTGATAGTTACGAATAAAGATGGTTATAAATTTA 147572 Query 194213 TTAAAGTTGTTATTGGTCAGTT-ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA 194271 |||||| || || ||| ||| || ||| |||| || ||||||||| ||| || Sbjct 147573 CTAAAGTAAAAATCCGT-AGTGGACGAATCCCTCAAATGGGAGATAAATTTGCTTCTAGA 147631 Query 194272 ATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 194331 |||||||| || || ||| || | | |||||||||||||| ||||| || Sbjct 147632 CATGCTCAAAAGGGGACCATTGGGATTACACTCCCTCAAGAAGATATGCCCTTTACTTCT 147691 Query 194332 TCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCAT 194390 ||| || || || ||||||||||| ||||| || |||||| |||||||| || Sbjct 147692 GAAGGGATAGTCCCTGATATTATTATTAATCCTCATGCTATTCCTAGTAGAATGACAAT 147750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 194157 AGAAGAAGGGTATGTGGATCGTATCACTGATAAT----ACAACAGATGGTTGTAGAATAG 194212 ||||||||| | ||||||| ||| ||||| | | | |||||||| || | | Sbjct 152918 AGAAGAAGGTTTTGTGGAT----TCAGTGATAGTCACGAATAAAGATGGTTATAAATTTA 152973 Query 194213 TTAAAGTTGTTATTGGTCAGTT-ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA 194271 |||||| || || ||| ||| || ||| |||| || ||||||||| ||| || Sbjct 152974 CTAAAGTAAAAATACGT-AGTGGACGAATCCCTCAAATGGGAGATAAATTTGCTTCTAGA 153032 Query 194272 ATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 194331 |||||||| || || ||| || | | |||||||||||||| ||||| || Sbjct 153033 CATGCTCAAAAGGGGACCATTGGGATTACACTCCCTCAAGAAGATATGCCCTTTACTTCT 153092 Query 194332 TCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCAT 194390 ||| || || || ||||||||||| ||||| || |||||| |||||||| || Sbjct 153093 GAAGGGATAGTCCCTGATATTATTATTAATCCTCATGCTATTCCTAGTAGAATGACAAT 153151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632445547099360