Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3117 93.3 7e-13 seq4120 86.0 1e-10 seq3128 86.0 1e-10 >seq3117 Length=6198915 Score = 93.3 bits (102), Expect = 7e-13 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 2018913 CTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCAC 2018972 || || ||||| |||||||| | ||| | | || |||||||||||||||||| || Sbjct 130073 CTACCATGGATAGAAAAGTATAGGCCGCAAACTTTTGAAGACATCGTGGGCAACGAGGAC 130014 Query 2018973 GCCGTTGCCTACCTCAAGGCGCTGGCCGCCGAC-GGCAACATGCCCAACCTCTTGCTGGC 2019031 | || | || || | | || || ||| ||||| |||||| || | | || Sbjct 130013 ACAGTATCGCGGCTAGCGGTGTTTGC-GCGGACAGGCAATGCCCCCAACATCATCATCGC 129955 Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| || || ||| |||||||| || | ||| |||||||| |||| || | || Sbjct 129954 GGGTCCCCCGGGCGTCGGCAAGACGACAACGATCTTATGCCTGGCTCGCGCTCTGCTCGG 129895 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 || || | ||| |||||||| ||||| |||||||| | || ||||| | ||||| Sbjct 129894 TGCAGCTTTCCGCGATGCCGTGCTGGAACTGAATGCGTCTAATGACCGCGGTATAGACGT 129835 Query 2019152 CGTGCGTA 2019159 |||||||| Sbjct 129834 CGTGCGTA 129827 >seq4120 Length=16292344 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 3530216 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 3530275 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 3530276 CTCACCCGGGGCATATC 3530292 >seq3128 Length=5114887 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 4164410 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 4164469 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 4164470 CTCACCCGGGGCATATC 4164486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915653680946108