Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3133 129 4e-25 seq1114 122 6e-23 seq2310 114 8e-21 >seq3133 Length=7630298 Score = 129 bits (142), Expect = 4e-25 Identities = 626/985 (64%), Gaps = 17/985 (2%) Strand=Plus/Minus Query 5551 GCTATGTTTCTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCG-GTCGC 5609 ||||| | ||||||||| || |||||||||| |||||| ||| | | ||| ||||| Sbjct 1022584 GCTATTTCTCTGTAATCAACTACACCGTCTTGCCAAGTACCTTTGA-CAGGTCCTGTCGC 1022526 Query 5610 CACACCGGTGAATACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTA 5669 || ||||| ||| || | | | | ||| || |||| ||| || || ||||| Sbjct 1022525 GTTGCCTGTGAAGGGATTATTATCTTCGTAATTGTGGACACCGGTCCAGCCGCGTCCGTA 1022466 Query 5670 CATGGCTACTCCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGAC 5729 ||| ||||| ||||| | | |||| | | | ||| | ||| |||| | | || Sbjct 1022465 CATAGCTACACCCACCACAATCTTCTTAGGGTTGACACCTTGAGCAAGCAAATATTTCAC 1022406 Query 5730 GGAAAAATCGGTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTG 5789 ||| || || ||||| ||||| |||||||| | |||||| | || || ||||| Sbjct 1022405 ACCAAAGTCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTG 1022346 Query 5790 GTGTCCCAG---ATCCGTCAACGACCAGGCACCCTTGTAATCGTACGTCATGACAAATAT 5846 || || || ||| || | |||||||| || ||| | ||||| |||| | || || Sbjct 1022345 ATGACCGAGGGTATC-GTTA--GACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGAT 1022289 Query 5847 GTGATCAAGGTATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGC 5906 ||| || | ||| || || || ||| ||||| || | ||||| || ||| || Sbjct 1022288 GTGGTCCATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGC 1022229 Query 5907 GCCGACGGCGCTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCA 5965 | | || |||| || ||| | |||| || ||| | || | | || Sbjct 1022228 ACTAATAGCAGAGGTCAGCTCGTATTTCT-TACCGGTCTCTTCGGAAAGGTCGTTCAACA 1022170 Query 5966 TCACGCGAAGTTCCCGCAGCAAAAGAGTGTAGGTGTTGCGATCCACCTCGGCATTACCCA 6025 | | || | |||| || || | ||| | | ||| | || | | || | Sbjct 1022169 TTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCC---TTGGGACTGCCAA 1022113 Query 6026 ACACAGAATTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGA 6085 | | ||| || ||||| || || || || ||||| ||||| || || ||||| |||| Sbjct 1022112 GGTCTGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGA 1022053 Query 6086 ACTTCCAGGTCTCCAGAAACTCGCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCAT 6145 ||||||| |||| || || || || ||||| || | ||| | | Sbjct 1022052 ACTTCCATGTCTGAAGGAAATCTTTCACAGAATCCACGAAGCGATCTCTCTTCTCTTTGT 1021993 Query 6146 CGTTCATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCA 6205 | | | ||| | || ||||| | ||||| || || ||||| ||||||| | | Sbjct 1021992 CTGTGAAGAAGAAGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAA 1021933 Query 6206 ACGAGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGT 6265 || || |||| | | ||||||||| |||||||| || ||||| || | Sbjct 1021932 GGTCAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCAT 1021873 Query 6266 TGTACGCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTA 6325 | | | || ||| || ||||| || || | || ||||| |||||||| | Sbjct 1021872 TCCAGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAA 1021813 Query 6326 CCTTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAAT 6383 | ||||| || ||||| || ||| ||| || || || | || | || | || Sbjct 1021812 CTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCG--AT 1021755 Query 6384 CTGCTTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAG 6443 | ||| | |||||| ||||| || || ||||||||||| || ||||||| || Sbjct 1021754 TTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAG 1021695 Query 6444 GTGCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCA 6503 || ||||||||||| |||||||| |||| || || | ||| || || ||||| Sbjct 1021694 ATGAGTCAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCA 1021635 Query 6504 CTCCACGAAATACGCACCGACGACT 6528 || ||||| ||||| ||||| ||| Sbjct 1021634 TTCAACGAAGTACGCTCCGACAACT 1021610 >seq1114 Length=8361563 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34746 CATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGT 34805 |||| ||||| | | ||||| |||| ||||| || |||||||| ||||| |||| Sbjct 2710526 CATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGT 2710467 Query 34806 CCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865 | || | | || |||| |||| || || ||||||||||||| || |||||| ||| Sbjct 2710466 CGGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTG 2710407 Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCT 34925 | || | ||||| ||||| | ||||| ||| || | | || | ||| ||| | Sbjct 2710406 GTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTT 2710347 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | |||||||| || ||||| ||||| ||||| ||||||||||| Sbjct 2710346 CAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 >seq2310 Length=6428792 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||||||||| || || || || | || |||| Sbjct 5745943 AGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCT 5745884 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || |||||||||||| | || | || |||||||| Sbjct 5745883 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5745824 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | ||| || || || || | ||| |||| Sbjct 5745823 TGGATCTTGGCTTTAAC--ATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGG 5745766 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || | |||||| |||||||||||||| Sbjct 5745765 TCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||||||||| || || || || | || |||| Sbjct 5746627 AGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCT 5746568 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || |||||||||||| | || | || |||||||| Sbjct 5746567 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5746508 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||| || || || || | || || || || |||| ||| |||| Sbjct 5746507 TGAATTTTGGCTTTAAC--ATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGG 5746450 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | |||||| |||||||||||||| Sbjct 5746449 TCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| || ||||| |||||||| || | || |||| Sbjct 5747083 AGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCC 5747024 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || ||||||||||| || |||||||||||| | || | || |||||||| Sbjct 5747023 TCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746964 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | || || || || || | || |||| Sbjct 5746963 TGGATCTTGGCTTTAAC--ATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGG 5746906 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| | |||||| || ||||||||||| Sbjct 5746905 TCTTTCCCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||||| ||||| ||||| || | | ||| | || Sbjct 5745031 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCT 5744972 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || ||||| ||||||| || ||||||||| | || | || |||||||| Sbjct 5744971 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5744912 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||| |||||| | | || | ||| || || || || | || ||||| Sbjct 5744911 TGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTT 5744852 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| |||||||||||||| Sbjct 5744851 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||||| ||||| ||||| || | | || | || Sbjct 5745259 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCT 5745200 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| ||||||| || ||||||||| | || | || |||||||| Sbjct 5745199 TCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5745140 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||| |||||| | | || | ||| || || || || | || ||||| Sbjct 5745139 TGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTT 5745080 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| |||||||||||||| Sbjct 5745079 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| || | || |||| |||| || || |||||||| Sbjct 5747291 CTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAA 5747232 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | || |||||||| | ||||| ||| || | Sbjct 5747231 GATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATTTTGGCTTTAAC--A 5747174 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || | ||| || || | ||| |||||||| || || | |||||| Sbjct 5747173 TTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTG 5747114 Query 34964 ACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 5747113 ACGAAGATCTGCAT 5747100 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||| ||| || || || ||||| || || || | || |||| || Sbjct 5746396 ACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCTTCT 5746337 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || ||||||||||| || |||||||||||| | || | || |||||||| | Sbjct 5746336 AGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 5746277 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||| || || || || | || || || || || | || ||||||| Sbjct 5746276 ATCTTGGCTTTAAC--ATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCT 5746219 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| | |||||| |||||||||||||| Sbjct 5746218 TTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||| || || ||||| ||||| || || | || |||| Sbjct 5746172 CAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATC 5746113 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || ||||||||||||| || ||||||||| | || | || |||||||| Sbjct 5746112 CTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTC 5746053 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | ||| | ||||| || | ||| ||| Sbjct 5746052 TTGGATCTTGGCCTTAAC--ATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATG 5745995 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || | |||||| |||||||||||||| Sbjct 5745994 GTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||| || || ||||| ||||| || || | || |||| Sbjct 5746856 CAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATC 5746797 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || ||||||||||||| || ||||||||| | || | || ||||| || Sbjct 5746796 CTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATC 5746737 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | ||| | ||||| || | ||| ||| Sbjct 5746736 TTGGATCTTGGCCTTAAC--ATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATG 5746679 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || | |||||| |||||||||||||| Sbjct 5746678 GTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325670682609068