Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3133 306 3e-78 seq2310 91.5 1e-13 seq1114 86.0 5e-12 seq3105 82.4 6e-11 >seq3133 Length=7630298 Score = 306 bits (338), Expect = 3e-78 Identities = 379/511 (74%), Gaps = 11/511 (2%) Strand=Plus/Plus Query 103567 CAACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGA 103626 |||||| |||| |||| | |||||||||||||| || |||||||| || || ||||| || Sbjct 2611402 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTCTGTAAAGTCGA 2611461 Query 103627 GATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCA 103686 || |||||||||| ||||||||||||||| || || || ||| | ||||| ||||| Sbjct 2611462 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCGAAGGACCACCAGCGCTGGGCCCCGCA 2611521 Query 103687 GTGTCCGTTCCTGaaaaaa-aCGGCT--GCTGGC---GCGCTGCCCGCCGGCCTT-GCGA 103739 || || ||||||| ||| | || ||| | || || || ||| ||| Sbjct 2611522 ATGCCCCTTCCTGAGGCGGCACGCCACCGCCGGCAACGTGCCGCTCGAGAGCCCCAGCGC 2611581 Query 103740 TGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTGCGCA 103799 | ||| | ||||||||||||||| |||| | ||| | ||| |||| |||||| | Sbjct 2611582 CGC-CGGTCGCGACGAGTGCGGCGTGCGCGCCCCGCCCAGCGCCA-CGCC--CGTGCGTA 2611637 Query 103800 TGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGG 103859 |||||||||||| ||||||||| | |||||||||||| | | | | || || || | Sbjct 2611638 TGCCCGGCCCCGTGCACCCTCGCTACGCCTCCGAGGCGGCGCGCCTCCGCACCTTCAAAG 2611697 Query 103860 ATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACA 103919 | ||||| || | || |||||||| ||| || |||| || ||||| |||| ||||| Sbjct 2611698 ACTGGCCGCGCTGCATGCGGCAGAAACCCGAGGAGCTGGCGGAGGCCGGCTTCTTCTACA 2611757 Query 103920 CCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGC 103979 |||||||| | ||||| ||||||||||||||||||||||| || || ||||| |||||| Sbjct 2611758 CCGGCCACGGGGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAGA 2611817 Query 103980 ACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTAC 104039 |||| || | |||||| | || ||||||| | || ||| ||||| ||||| | | Sbjct 2611818 ACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAGC 2611877 Query 104040 TTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 | || || |||| ||| || |||||||| || Sbjct 2611878 TGGTGAAAGGCCGCGACTACGTACAAAAAGT 2611908 Score = 250 bits (276), Expect = 2e-61 Identities = 661/995 (66%), Gaps = 27/995 (3%) Strand=Plus/Plus Query 29067 GTCGCTGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTG 29126 |||| ||||| || || |||||||| || || | || || || || || || Sbjct 1021614 GTCGGAGCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTA 1021673 Query 29127 CCGCTGCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGG 29186 || | || || || | ||||| ||||||||||| || || |||||||| ||||| || Sbjct 1021674 CCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGC 1021733 Query 29187 CTCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAG 29246 |||||||| | || || |||||||| | || || ||||| || |||| Sbjct 1021734 ATCAACGACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGC 1021793 Query 29247 GGCCGTTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAA 29306 ||||| |||||||||||| | ||||||||||||||||| || | || || || ||| Sbjct 1021794 GGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAA 1021853 Query 29307 AAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCC 29366 ||||| | ||| | ||||| ||||| |||||||| ||||| |||||||| ||| | Sbjct 1021854 AAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTT 1021913 Query 29367 AAGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGAC 29426 || | |||| || |||| ||||| || || |||||||| |||||||| | | || Sbjct 1021914 AAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGAT 1021973 Query 29427 CCGTTCTATTTCATGCAC-GACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGA 29485 || |||| ||| | ||| ||| || || | | || ||||| || || | ||| Sbjct 1021974 CCCTTCTTCTTC-TTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGA 1022032 Query 29486 ATTTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGG 29545 || || ||| |||||||| || ||||| || || || || ||||| || || || || Sbjct 1022033 TTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGG 1022092 Query 29546 CAAAGGCGCCAA-CCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT- 29603 || || || || || ||| ||||||| || |||| || | || | || || Sbjct 1022093 TAAGGGAGCTAATCCAGAC-CTTGGCAGTCCCAAG---GACG--GAGATGT-TTACGTTG 1022145 Query 29604 --TTACTAAAGGAATTGCGCGCAATGATGGACGA-GTTACAATTGCAAACGGGCAAAACG 29660 ||| | ||||||||||| | |||| || |||| || | | | || || || | Sbjct 1022146 AATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCCGAAG-AGACCGGTAAGAAA 1022204 Query 29661 TACGAGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGAC 29720 |||||| |||| || || ||| | ||| || |||||| || || | ||| Sbjct 1022205 TACGAGCTGACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCGATTACAGT 1022264 Query 29721 GCTGCGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGG 29780 | || || |||| | || | || ||||| ||||| ||||| || |||||||| ||| Sbjct 1022265 GAGGCTCAGAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAGGCGCCTGG 1022324 Query 29781 TCAAAC---ACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAAC 29837 || ||| ||| | || | || ||| | || ||||| || ||||||||| || Sbjct 1022325 TCTAACGATACC---CTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGAACCCTAAG 1022381 Query 29838 GAACTGTACAACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCG 29894 ||| |||| || ||| | || | | ||||| | || || || |||| Sbjct 1022382 GAAACTTACACAACTGACTTTGGTGTGAAATATTTGCTTGC---TCAAGGTGTCAACCCT 1022438 Query 29895 CGCAAAATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTAT 29954 || ||| | ||||| || || |||||||| ||||| ||||| || || ||| Sbjct 1022439 AAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGTCCACAATTAC 1022498 Query 29955 GACGGTGACAACTATTTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGAC 30014 || | | | || || || |||| || | || || || | || |||||| ||||| Sbjct 1022499 GAAGATAATAATCCCTTCACAGGCAACGCGACAGGACCTGTCAAAGGTACTTGGCAAGAC 1022558 Query 30015 GGCGTTGTCGACTATCGCCAAATTGAAAACGAAAT 30049 || || || || || | |||| | ||| ||||| Sbjct 1022559 GGTGTAGTTGATTACAGAGAAATAGCAAATGAAAT 1022593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 104291 AACGTGTGTTTTGTGCCGTGCGGGCATGTGGTGGCGTGCGTCAAGTGCGCGTTTGCTTTG 104350 |||||||| || |||||||||||||| ||||||||||||| |||||||||| | | | Sbjct 2612060 AACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGCGCGCTGTCGACG 2612119 Query 104351 GCCGAGTGCCCCATGTGCCG 104370 | | |||||||||||||||| Sbjct 2612120 GACAAGTGCCCCATGTGCCG 2612139 >seq2310 Length=6428792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| | || |||| || Sbjct 5747100 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 5747159 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || || || || ||||| | ||| || ||| Sbjct 5747160 GACACCATCGAGAATGTTAAAGCCAAAATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5747219 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | ||||| | || || |||||| ||||||| | | ||| | ||||||||||| Sbjct 5747220 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCGGACTACAAC 5747279 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| ||||| ||||| Sbjct 5747280 ATCCAGAAGGAGTCTACTCTGCACTTGGTG 5747309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||||||||| || | ||| ||| | Sbjct 5744820 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5744879 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||| || || || |||||| | ||| || ||| Sbjct 5744880 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5744939 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || ||||||||||| |||| |||| || | ||||||||| Sbjct 5744940 CAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGAACATTGTCTGACTACAAC 5744999 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || || | ||| |||| Sbjct 5745000 ATCCAGAAGGAATCCACACTTCACTTGGT 5745028 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||||||||||||| | ||| || || Sbjct 5746644 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCT 5746703 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| ||||| |||||| | ||| || ||| Sbjct 5746704 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAG 5746763 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | || || |||||||| ||||| | ||| | | ||||||||| Sbjct 5746764 CAGAGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAAC 5746823 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || ||||| ||||| || | ||| |||| Sbjct 5746824 ATCCAAAAAGAGTCCACCCTCCACTTGGT 5746852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| |||||||| || || || || ||||| ||||| ||| | || |||| || Sbjct 5744589 AAGATGCAGATTTTTGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCT 5744648 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || | | | || || |||||| || ||||| ||| | ||| || Sbjct 5744649 TCGGACACAATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGAC 5744708 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 ||||||||| | || | ||| || ||||||||||| |||||| ||| || | || Sbjct 5744709 CAGCAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGC----ACATTGTCTGA 5744764 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||| || ||||| || || | ||| |||| Sbjct 5744765 CTACAACATCCAGAAGGAATCCACACTTCACTTGGT 5744800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||||||||| || | ||| ||| | Sbjct 5745048 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5745107 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||| || || || |||||| | ||| || ||| Sbjct 5745108 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5745167 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || |||||||| |||| |||| || | ||||||||| Sbjct 5745168 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGAACATTGTCTGACTACAAC 5745227 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || || | ||| |||| Sbjct 5745228 ATCCAGAAGGAATCCACACTTCACTTGGT 5745256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || || || ||||| ||||| || | || || || Sbjct 5745504 ATGCAAATTTTTGTTAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCTTCA 5745563 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| ||||| ||||| ||||| | ||| || ||| Sbjct 5745564 GATACCATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 5745623 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | ||| ||||||||| ||||||| | ||| | | || |||||| Sbjct 5745624 CAACGTCTCATCTTTGCCGGTAAACAGTTGGAGGATGGACGTACACTCTCTGATTACAAC 5745683 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||| ||||| || || | ||| |||| ||| | ||||||| |||| Sbjct 5745684 ATTCAGAAGGAATCCACACTCCACTTGGTATTGCGTCTGCGAGGTGGAA 5745732 >seq1114 Length=8361563 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/239 (68%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 107549 GTTTAA-AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 |||||| |||||| || || || ||||| | || || |||||||| || | || | Sbjct 2710287 GTTTAACAATGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTTG 2710346 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 | || || ||| ||| | |||||| || ||| || ||||| ||| | || Sbjct 2710347 AAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCAC 2710406 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 |||||||| ||| | || | || || |||||| |||| || | ||| || | | Sbjct 2710407 CAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCCG 2710466 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 |||||||||| || ||||| || || | ||| |||||||||| | ||||| || ||| Sbjct 2710467 ACTACAACATCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGGTAAT 2710525 >seq3105 Length=7089461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94241 TGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCAGTGGGGC 94300 || |||| ||| | | ||||| ||||||||| |||| | ||||||||||||||| || Sbjct 124367 TGCCCCACGCGGTACACGCGGTCCTGCGCCTGCTGCTCCAGCTGCGGGTTCCAGTGCGGG 124426 Query 94301 TCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 ||||||| | | ||| || ||||| ||||| | |||||||||||| Sbjct 124427 TCCAGCAGCAGCAGGTGGCTGGCGCCGCACAGGTTCAGCCCCACGCCGCC 124476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398849712775108