Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq5346 192 9e-44 seq2115 192 9e-44 seq1358 158 2e-33 seq2310 102 1e-16 seq1114 98.7 2e-15 >seq5346 Length=541963 Score = 192 bits (212), Expect = 9e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| |||||||||||||| ||||| ||| | || ||||||| | | Sbjct 231238 TGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCTG 231297 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||||||| || || ||| ||||||||| || || || || |||| Sbjct 231298 ATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAAC 231357 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| ||||||||||| || || ||||| || ||| | |||||||||| Sbjct 231358 AGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAATA 231417 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | ||||||||| || | ||||| || ||| |||||||||||||||| Sbjct 231418 TTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 231466 >seq2115 Length=629047 Score = 192 bits (212), Expect = 9e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| |||||||||||||| ||||| ||| | || ||||||| | | Sbjct 361006 TGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCTG 360947 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||||||| || || ||| ||||||||| || || || || |||| Sbjct 360946 ATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAAC 360887 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| ||||||||||| || || ||||| || ||| | |||||||||| Sbjct 360886 AGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAATA 360827 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | ||||||||| || | ||||| || ||| |||||||||||||||| Sbjct 360826 TTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 360778 >seq1358 Length=322254 Score = 158 bits (174), Expect = 2e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146064 ACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATAAAATACAA 146123 ||||| ||| | || ||||||| | ||||||||| | ||||||||| || || ||| Sbjct 1 ACAATCACTTTGGAAGTAGAACCTTCTGATACTATTGAGAATGTAAAAGCCAAGATCCAA 60 Query 146124 CTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGAT 146183 ||| ||||| || || || || ||||| ||||| || ||||| ||||||||||| || Sbjct 61 GATAAGGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 120 Query 146184 GATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTA 146243 || ||||| || ||| | ||||||||||| ||||||||| || | ||||| || ||| Sbjct 121 GACAATAGGACTTTATCTGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 180 Query 146244 CGATTAAGAGGAGGTAA 146260 |||||||||||||||| Sbjct 181 AGATTAAGAGGAGGTAA 197 >seq2310 Length=6428792 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || ||||| ||||| || || | || || |||| | Sbjct 5745277 TGCAGATTTTTGTGAAGACCTTGACAGGCAAAACCATCACATTAGAGGTTGAACCCTCGG 5745336 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||||||| ||||| ||| || ||||||||||| || ||||| | Sbjct 5745337 ACACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGC 5745396 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| ||||| || | || ||| | | || | | || || |||| Sbjct 5745397 AACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCGGACTACAATA 5745456 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| |||||||| | || || || | || || |||||||| Sbjct 5745457 TCCAAAAGGAATCGACACTACACTTGGTGCTTCGTTTGAGAGGAGG 5745502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || ||||| ||||| || || ||| | || || |||| || Sbjct 5746189 TGCAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCCG 5746248 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| || ||||| || || || || || | Sbjct 5746249 ACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGC 5746308 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || ||||| |||| ||| | | || | | |||||||||| Sbjct 5746309 AACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAATA 5746368 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || || |||| || || ||||| | |||| |||| Sbjct 5746369 TCCAAAAAGAGTCCACCCTCCACTTGGTGTTACGTCTGCGAGGTGGTA 5746416 >seq1114 Length=8361563 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | || || ||||| || || | || || ||| | Sbjct 2710296 TGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTG 2710355 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||||||| ||||| ||| ||||| ||||||||||| ||||| | Sbjct 2710356 ACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAGC 2710415 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || ||||| || || ||| | || || | || || || | Sbjct 2710416 AAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCCGACTACAACA 2710475 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | || || |||||||| | || || || || | | |||||||||| Sbjct 2710476 TCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGGTAA 2710524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786111643510240