Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1248 93.3 5e-14 seq1205 93.3 5e-14 >seq1248 Length=515940 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/281 (69%), Gaps = 21/281 (7%) Strand=Plus/Minus Query 192882 ATGGTTAAACAAGCCATTGGA-TTTATTCCGTGTCACAA----CTTA---AAAACGGAAA 192933 ||| ||||||||||||| ||| |||||||| |||| |||| | || ||| | Sbjct 298561 ATGATTAAACAAGCCATGGGAGTTTATTCC-----ACAAATTTCTTACTTAGAATGGATA 298507 Query 192934 CAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGATATTGCAA--- 192990 | || | ||| ||| |||||| |||||||| | || |||||| | || ||| Sbjct 298506 CTTTAAGTAATATTTTATTTTATCCTCAAAAACCTTTAGTAACCACAAA-AT--CAATGG 298450 Query 192991 AATTTAATAAATTAGACGA-TTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGC 193049 ||| | ||||| | || |||||| ||| |||||||| || || || |||| Sbjct 298449 AATACATGAAATTTAAGGAATTATCCCC-TGGACAAAATGCTATAGTAGCCATTGCTTCT 298391 Query 193050 TATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGA 193109 ||||| ||||||||||||||||| ||||||| | ||| || | | || || ||||| Sbjct 298390 TATACGGGTTATAATCAAGAAGATTCTATTATTATGAATCAAAGTGCAATAGATCGAGGA 298331 Query 193110 TTATTTGGTACTATAACTTATAATACATATACAGTTGAAGA 193150 |||||| | | | | ||||| || ||||| | | |||| Sbjct 298330 TTATTTAGAAGTTTTTTTTATAGGACGTATACTGATCAAGA 298290 >seq1205 Length=221829 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/277 (69%), Gaps = 13/277 (5%) Strand=Plus/Plus Query 192882 ATGGTTAAACAAGCCATTGGA-TTTATTCCGTGTCACAACTTA---AAAACGGAAACAGT 192937 ||| ||||||||||||| ||| ||||||| | | |||| | || ||| || | Sbjct 147005 ATGATTAAACAAGCCATGGGAGTTTATTCTAC-TAATTTCTTACTTAGAATGGATACTTT 147063 Query 192938 ATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGATATTGCAA---AATT 192994 | | ||| ||| |||||| |||||||| | || |||||| | || ||| ||| Sbjct 147064 AAGTAATATTTTATTTTATCCTCAAAAACCTTTAGTAACCACAAA-AT--CAATGGAATA 147120 Query 192995 TAATAAATTAGACGA-TTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATA 193053 | ||||| | || |||||| ||| |||||||| || ||||| |||| |||| Sbjct 147121 CATGAAATTTAAGGAATTATCCCC-TGGACAAAATGCTATAGTAGCTATTGCTTCTTATA 147179 Query 193054 CTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTAT 193113 | ||||||||||||||||| ||||||| | ||| || | | || || ||||||||| Sbjct 147180 CGGGTTATAATCAAGAAGATTCTATTATTATGAATCAAAGTGCAATAGATCGAGGATTAT 147239 Query 193114 TTGGTACTATAACTTATAATACATATACAGTTGAAGA 193150 || | | | | ||||| || ||||| | | |||| Sbjct 147240 TTAGAAGTTTTTTTTATAGGACGTATACTGATCAAGA 147276 Score = 89.7 bits (98), Expect = 7e-13 Identities = 193/281 (69%), Gaps = 21/281 (7%) Strand=Plus/Plus Query 192882 ATGGTTAAACAAGCCATTGGA-TTTATTCCGTGTCACAA----CTTA---AAAACGGAAA 192933 ||| ||||||||||||| ||| ||||||| |||| |||| | || ||| | Sbjct 152406 ATGATTAAACAAGCCATGGGAGTTTATTCT-----ACAAATTTCTTACTTAGAATGGATA 152460 Query 192934 CAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGATATTGCAA--- 192990 | || | ||| ||| |||||| |||||||| | || |||||| | || ||| Sbjct 152461 CTTTAAGTAATATTTTATTTTATCCTCAAAAACCTTTAGTAACCACAAA-AT--CAATGG 152517 Query 192991 AATTTAATAAATTAGACGA-TTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGC 193049 ||| | ||||| | || |||||| ||| |||||||| || || || |||| Sbjct 152518 AATACATGAAATTTAAGGAATTATCCCC-TGGACAAAATGCTATAGTAGCCATTGCTTCT 152576 Query 193050 TATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGA 193109 ||||| ||||||||||||||||| ||||||| | ||| || | | || || ||||| Sbjct 152577 TATACGGGTTATAATCAAGAAGATTCTATTATTATGAATCAAAGTGCAATAGATCGAGGA 152636 Query 193110 TTATTTGGTACTATAACTTATAATACATATACAGTTGAAGA 193150 |||||| | | | | ||||| || ||||| | | |||| Sbjct 152637 TTATTTAGAAGTTTTTTTTATAGGACGTATACTGATCAAGA 152677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635133359880160