Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1251 95.1 2e-14 seq1248 95.1 2e-14 >seq1251 Length=283413 Score = 95.1 bits (104), Expect = 2e-14 Identities = 321/487 (66%), Gaps = 30/487 (6%) Strand=Plus/Minus Query 172888 TAAGGTTGCTCAGTTGAGT-GGTTACATTGCAGAACAAACTGATTATAAACATGGTGAAC 172946 ||| || || || || ||| ||||| ||||||||||| |||| ||||| |||||||||| Sbjct 60756 TAAAGTAGCACAATT-AGTAGGTTATATTGCAGAACATACTGCTTATAGACATGGTGAAG 60698 Query 172947 AAAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACA-TA 173005 | ||| | |||||| || || || || |||||||| || | ||||| | || Sbjct 60697 TATCACTTGCTTCTACTATAGTAGCTTTAGCTCAAGATTTTGTTGGATCTAATAATATTA 60638 Query 173006 ACATTACTTGA-ACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGC 173064 | ||| || | || ||||||| || ||| |||||||| ||||||||||||| | Sbjct 60637 ATATT--TTAATGCCTAATGGTCAATTCGGTTCTAGACTTATGGGAGGTAAAGATTGTTC 60580 Query 173065 CGCATCAAGGTATATTTATACTAAACCGCATAAAATTTTAAAATATATATTTAGAGAAGA 173124 | ||||||| |||| ||| |||||| | | || ||| ||| Sbjct 60579 TAGTGTTCGTTATATTTTTACTGAACTTTCTAAAATAACCAGAACAATTTTTCATGAAAG 60520 Query 173125 AGATGACCCTAT-TTTAAT--TTTTACTCCGGAAGGAGAACC-----AACCAC----TTT 173172 ||||| | | | ||||| ||| | | |||| | || | |||||| || Sbjct 60519 TGATGATCTTGTACTTAATTATTTAATTGAAGAAGAAAAATCTGTAGAACCACAATATTA 60460 Query 173173 TGTTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTC 173232 |||||| | || || | ||||| | |||||||| |||||| || ||||| ||| Sbjct 60459 TGTTCCTATTATTCCAATGTTATTAGTAAATGGTTCTGATGGTATTGGTACTGGTTGGAG 60400 Query 173233 GTGTTTTATTCCTCAATATAATCCATTAGAATTGATAGATATTATTATTTCAAAATTAAT 173292 ||||||| | |||||||| ||||| | || |||| ||| | || |||||| Sbjct 60399 TACAAATATTCCTAATTATAATCCTTTAGATCTTATTGATAATATAA---AAAGATTAAT 60343 Query 173293 GGGGGAAAGTACTTCAATTCAGTTAGAAAATTTAAACCCATATTACCGAAATTTTAAAGG 173352 | | | | || ||| | |||||| | | || | ||| |||||||||||||| Sbjct 60342 TAGAG-ATGAAC--CAACT---GTAGAAA---TGACACCTTTTTATCGAAATTTTAAAGG 60292 Query 173353 AAAAATT 173359 ||| ||| Sbjct 60291 AAATATT 60285 >seq1248 Length=515940 Score = 95.1 bits (104), Expect = 2e-14 Identities = 321/487 (66%), Gaps = 30/487 (6%) Strand=Plus/Minus Query 172888 TAAGGTTGCTCAGTTGAGT-GGTTACATTGCAGAACAAACTGATTATAAACATGGTGAAC 172946 ||| || || || || ||| ||||| ||||||||||| || | ||||| |||||||||| Sbjct 55908 TAAAGTAGCACAATT-AGTAGGTTATATTGCAGAACATACAGCTTATAGACATGGTGAAG 55850 Query 172947 AAAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACA-TA 173005 | ||| | |||||| || || || || |||||||| || | ||||| | || Sbjct 55849 TATCACTTGCTTCTACTATAGTAGCTTTAGCTCAAGATTTTGTTGGATCTAATAATATTA 55790 Query 173006 ACATTACTTGA-ACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGC 173064 | ||| || | || ||||||| || ||| |||||||| ||||||||||||| | Sbjct 55789 ATATT--TTAATGCCTAATGGTCAATTCGGTTCTAGACTTATGGGAGGTAAAGATTGTTC 55732 Query 173065 CGCATCAAGGTATATTTATACTAAACCGCATAAAATTTTAAAATATATATTTAGAGAAGA 173124 | | ||||||| |||| ||| |||||| | | || ||| ||| Sbjct 55731 TAGTGCTCGTTATATTTTTACTGAACTCTCTAAAATAACCAGAACAATTTTTCATGAAAG 55672 Query 173125 AGATGACCCTAT-TTTAAT--TTTTACTCCGGAAGGAGAACC-----AACCAC----TTT 173172 ||||| | | | ||||| ||| | | |||| | || | |||||| || Sbjct 55671 TGATGATCTTGTACTTAATTATTTAATTGAAGAAGAAAAATCTGTAGAACCACAATATTA 55612 Query 173173 TGTTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTC 173232 |||||| | || || | ||||| | |||||||| |||||| || ||||| ||| Sbjct 55611 TGTTCCTATTATTCCAATGTTATTAGTAAATGGTTCTGATGGTATTGGTACTGGTTGGAG 55552 Query 173233 GTGTTTTATTCCTCAATATAATCCATTAGAATTGATAGATATTATTATTTCAAAATTAAT 173292 ||||||| | |||||||| ||||| | || |||| ||| | || |||||| Sbjct 55551 TACAAATATTCCTAATTATAATCCTTTAGATCTTATTGATAATATAA---AAAGATTAAT 55495 Query 173293 GGGGGAAAGTACTTCAATTCAGTTAGAAAATTTAAACCCATATTACCGAAATTTTAAAGG 173352 | | | | || ||| | |||||| | | || | ||| |||||||||||||| Sbjct 55494 TAGAG-ATGAAC--CAACT---GTAGAAA---TGACACCTTTTTATCGAAATTTTAAAGG 55444 Query 173353 AAAAATT 173359 ||| ||| Sbjct 55443 AAATATT 55437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655234359748000