Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1248 89.7 6e-13 seq1251 86.0 8e-12 seq2469 84.2 3e-11 seq1205 84.2 3e-11 >seq1248 Length=515940 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 165162 TAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACA 165221 |||||| || |||||| || ||| |||||||||| |||| ||||| |||||||||| Sbjct 55908 TAAAGTAGCACAATTAGTAGGTTATATTGCAGAACATACAGCTTATAGACATGGTGAAGT 55849 Query 165222 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | | | |||||| | || || |||||||||||||| | |||||||| Sbjct 55848 ATCACTTGCTTCTACTATAGTAGCTTTAGCTCAAGATTTTGTTGGATCTAATAATATT-- 55791 Query 165282 ATTACTTGAA--CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATT 165334 | || || || ||| |||||||||| ||| | ||| | ||||||||||||| Sbjct 55790 AATATTTTAATGCCTAATGGTCAATTCGGTTCTAGACTTATGGGAGGTAAAGATT 55736 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 192914 AGAAGAAGGGTATGTGGATCGTATCACTGATAAT----ACAACAGATGGTTGTAGAATAG 192969 ||||||||| | ||||||| ||| ||||| | | | |||||||| || | | Sbjct 298049 AGAAGAAGGTTTTGTGGAT----TCAGTGATAGTTACGAATAAAGATGGTTATAAATTTA 297994 Query 192970 TTAAAGTTGTTATTGGTCAGTT-ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA 193028 |||||| || || ||| ||| || ||| |||| || ||||||||| ||| || Sbjct 297993 CTAAAGTAAAAATACGT-AGTGGACGAATCCCTCAAATGGGAGATAAATTTGCTTCTAGA 297935 Query 193029 ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 193088 || ||||| || || ||| || | | |||||||||||||| ||||| || Sbjct 297934 CATGCTCAAAAGGGGACCATTGGGATTACACTCCCTCAAGAAGATATGCCCTTTACTTCT 297875 Query 193089 TCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 ||| || || || ||||||||||||||||| || |||||| |||||||| || Sbjct 297874 GAAGGGATAGTCCCTGATATTATTATTAATCCTCATGCTATTCCTAGTAGAATGACAAT 297816 >seq1251 Length=283413 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 165162 TAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACA 165221 |||||| || |||||| || ||| |||||||||| || | ||||| |||||||||| Sbjct 60756 TAAAGTAGCACAATTAGTAGGTTATATTGCAGAACATACTGCTTATAGACATGGTGAAGT 60697 Query 165222 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | | | |||||| | || || |||||||||||||| | |||||||| Sbjct 60696 ATCACTTGCTTCTACTATAGTAGCTTTAGCTCAAGATTTTGTTGGATCTAATAATATT-- 60639 Query 165282 ATTACTTGAA--CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATT 165334 | || || || ||| |||||||||| ||| | ||| | ||||||||||||| Sbjct 60638 AATATTTTAATGCCTAATGGTCAATTCGGTTCTAGACTTATGGGAGGTAAAGATT 60584 >seq2469 Length=3733711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 192573 GGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAGACAGTATT 192632 ||||||||| | |||||||| || || || || || || ||||| || |||||| || Sbjct 1710215 GGTATTAATTCAATTGTTGCCATCTTATGTTACACAGGATACAACCAGGAGGACAGTGTT 1710274 Query 192633 ATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATAACTTATAATACATAT 192692 ||||||||| | || || ||||||||||||| ||| | || || ||| ||||| Sbjct 1710275 ATTTTAAATGCATCTGCTGTTGAAAGAGGATTTTTTAGATCTGTATTTTACCGGTCATAT 1710334 Query 192693 ACAGTTGAAGAAACAAAAA 192711 | || | |||| |||||| Sbjct 1710335 AAAGATTCAGAATCAAAAA 1710353 >seq1205 Length=221829 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 192914 AGAAGAAGGGTATGTGGATCGTATCACTGATAAT----ACAACAGATGGTTGTAGAATAG 192969 ||||||||| | ||||||| ||| ||||| | | | |||||||| || | | Sbjct 147517 AGAAGAAGGTTTTGTGGAT----TCAGTGATAGTTACGAATAAAGATGGTTATAAATTTA 147572 Query 192970 TTAAAGTTGTTATTGGTCAGTT-ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA 193028 |||||| || || ||| ||| || ||| |||| || ||||||||| ||| || Sbjct 147573 CTAAAGTAAAAATCCGT-AGTGGACGAATCCCTCAAATGGGAGATAAATTTGCTTCTAGA 147631 Query 193029 ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 193088 || ||||| || || ||| || | | |||||||||||||| ||||| || Sbjct 147632 CATGCTCAAAAGGGGACCATTGGGATTACACTCCCTCAAGAAGATATGCCCTTTACTTCT 147691 Query 193089 TCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 ||| || || || ||||||||||||||||| || |||||| |||||||| || Sbjct 147692 GAAGGGATAGTCCCTGATATTATTATTAATCCTCATGCTATTCCTAGTAGAATGACAAT 147750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 192914 AGAAGAAGGGTATGTGGATCGTATCACTGATAAT----ACAACAGATGGTTGTAGAATAG 192969 ||||||||| | ||||||| ||| ||||| | | | |||||||| || | | Sbjct 152918 AGAAGAAGGTTTTGTGGAT----TCAGTGATAGTCACGAATAAAGATGGTTATAAATTTA 152973 Query 192970 TTAAAGTTGTTATTGGTCAGTT-ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA 193028 |||||| || || ||| ||| || ||| |||| || ||||||||| ||| || Sbjct 152974 CTAAAGTAAAAATACGT-AGTGGACGAATCCCTCAAATGGGAGATAAATTTGCTTCTAGA 153032 Query 193029 ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 193088 || ||||| || || ||| || | | |||||||||||||| ||||| || Sbjct 153033 CATGCTCAAAAGGGGACCATTGGGATTACACTCCCTCAAGAAGATATGCCCTTTACTTCT 153092 Query 193089 TCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 ||| || || || ||||||||||||||||| || |||||| |||||||| || Sbjct 153093 GAAGGGATAGTCCCTGATATTATTATTAATCCTCATGCTATTCCTAGTAGAATGACAAT 153151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628487422801920