Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5346 233 4e-56 seq2115 233 4e-56 seq1358 201 2e-46 seq2310 188 1e-42 seq1114 134 3e-26 >seq5346 Length=541963 Score = 233 bits (258), Expect = 4e-56 Identities = 189/229 (83%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||| || || || ||| |||||| || ||||||||||| | Sbjct 231465 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 231406 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| |||||| | |||||| |||||||| || ||||| ||||| ||||||| Sbjct 231405 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 231346 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| |||||||| ||||| ||||||||||| ||||| |||||| |||||||| Sbjct 231345 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 231286 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || ||||| ||||| || ||||||||||| |||||||| Sbjct 231285 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 233 bits (258), Expect = 4e-56 Identities = 189/229 (83%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||| || || || ||| |||||| || ||||||||||| | Sbjct 360779 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGG 360838 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| |||||| | |||||| |||||||| || ||||| ||||| ||||||| Sbjct 360839 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 360898 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| |||||||| ||||| ||||||||||| ||||| |||||| |||||||| Sbjct 360899 GGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 360958 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || ||||| ||||| || ||||||||||| |||||||| Sbjct 360959 CTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1358 Length=322254 Score = 201 bits (222), Expect = 2e-46 Identities = 162/196 (83%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||| || || || ||| |||||| || ||||||||||||| Sbjct 196 TACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAG 137 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| |||||| | |||||| |||||||| || ||||| ||||| ||||||| Sbjct 136 ATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAG 77 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||| ||||| ||||||||||| ||||| |||||| |||||||| Sbjct 76 GGATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTA 17 Query 82762 CTTCCAAAGTTATCGT 82777 |||||||||| || || Sbjct 16 CTTCCAAAGTGATTGT 1 >seq2310 Length=6428792 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||| || || ||||| || || ||||| || || ||||| || || || Sbjct 5745502 CCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAA 5745443 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || || |||||||| || | ||| |||||||| || Sbjct 5745442 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 5745383 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||| || ||||||||||||||||| || || ||||| || Sbjct 5745382 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACC 5745323 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || ||||||||||| ||||| ||||| |||||||| Sbjct 5745322 TCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| || || ||||| ||||| || || || |||| Sbjct 5745048 TACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 5744989 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| |||||||| || ||||| || |||||||| | ||| || || ||||| | Sbjct 5744988 ACAATGTTCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 5744929 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || |||||||| ||||||||||| || ||| ||||| | Sbjct 5744928 GGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCA 5744869 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 5744868 CTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| || ||||| || || ||||| ||||| || || |||||||| Sbjct 5745730 CCACCTCGCAGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCAGAG 5745671 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | ||||| || |||||||| || | ||| || ||||| || Sbjct 5745670 AGTGTACGTCCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 5745611 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| ||||| ||||| ||||| ||||| ||||| |||||| || Sbjct 5745610 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAACC 5745551 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 5745550 TCCAATGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCAT 5745504 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| || || ||||| ||||| || || || |||| Sbjct 5745276 TACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 5745217 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| |||||||| || || || || |||||||| | ||| || || ||||| | Sbjct 5745216 ACAATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 5745157 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || |||||||| ||||||||||| || ||| ||||| | Sbjct 5745156 GGATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCA 5745097 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 5745096 CTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||| | || ||||| || || || ||||| || ||||||||||| | Sbjct 5746416 TACCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGG 5746357 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| |||||||| ||||| || || ||||| || | ||| || ||||| | Sbjct 5746356 AGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGG 5746297 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| ||||| ||||| || || || || ||||| | Sbjct 5746296 GGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCA 5746237 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 5746236 CTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| || || ||||| ||||| || || || |||| Sbjct 5744820 TACCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAG 5744761 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| || ||||| || |||||||| | ||| || || ||||| | Sbjct 5744760 ACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 5744701 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||||||||| || || ||||||||||| || || ||| || | Sbjct 5744700 GGATGCCCTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCA 5744641 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 5744640 CCTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCAT 5744592 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || ||||| || || || ||||| || || || || |||| Sbjct 5746872 TACCACCACGGAGACGCAGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAG 5746813 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || ||||| ||||| || || ||||| | ||| || || ||||| | Sbjct 5746812 AGAGTGTACGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGG 5746753 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || ||||| || || || ||| |||||| | Sbjct 5746752 GGATGCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGA 5746693 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 5746692 CTTCTAAGGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || |||||||||||||| || ||||| || || || || || || | | || Sbjct 5747315 ACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCC 5747256 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||||| || || ||||| || | ||| || ||||| || || |||||||| Sbjct 5747255 ATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTT 5747196 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || ||||| ||||| || || || || ||| || || ||||| || || Sbjct 5747195 GTCTTGGATTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGAT 5747136 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||| ||||| || || |||||||| Sbjct 5747135 GGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 >seq1114 Length=8361563 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | | || || ||||| || || ||||| ||||| || || || || | Sbjct 2710523 TACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGG 2710464 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| | ||||| || || ||||| | |||||| |||||||| | Sbjct 2710463 ACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 2710404 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || |||||||| || |||||||||||||| || || ||| | ||| | Sbjct 2710403 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAA 2710344 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 | || || ||||| || || || || | || ||||| || ||||||||| ||| Sbjct 2710343 CCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATTGTTA 2710290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981757106128908